RetrogeneDB ID: | retro_mmul_17 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:84910149..84910623(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000029539 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP4S1 | ||
Ensembl ID: | ENSMMUG00000003123 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.33 % |
Parental protein coverage: | 70.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQYAALFIVVG |
MIKFFLMVNKQGQT.L.KYYEHVDINKRTLLETEVIKSCLSRSNEQC.F.EYKDF.LIYRQ.AALFIVVG | |
Retrocopy | MIKFFLMVNKQGQTQLCKYYEHVDINKRTLLETEVIKSCLSRSNEQCPFTEYKDFRLIYRQCAALFIVVG |
Parental | VNDTENYASLDFFFFFFDGVLPCCQAVVHELDVSF |
V.DTE.......F...F..VL......V.ELD..F | |
Retrocopy | VDDTETEMAIYEFIHNFVEVLDEYFSRVSELDKMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .58 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 1 .67 RPM |
SRP007412_cerebellum | 0 .32 RPM | 2 .20 RPM |
SRP007412_heart | 0 .00 RPM | 0 .82 RPM |
SRP007412_kidney | 0 .12 RPM | 0 .94 RPM |
SRP007412_liver | 0 .00 RPM | 0 .20 RPM |
SRP007412_testis | 0 .08 RPM | 0 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3496 |
Pan troglodytes | retro_ptro_2368 |
Gorilla gorilla | retro_ggor_2363 |
Pongo abelii | retro_pabe_2889 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013301 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000005786 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000009468 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013009 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011671 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003123 | 1 retrocopy |
retro_mmul_17 ,
|
Macaca mulatta | ENSMMUG00000014055 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017579 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000014031 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005723 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017161 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005765 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010759 | 1 retrocopy |