RetrogeneDB ID: | retro_mmul_202 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:124386330..124387722(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000015706 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF12 | ||
Ensembl ID: | ENSMMUG00000017458 | ||
Aliases: | DCAF12, WDR40A | ||
Description: | None |
Percent Identity: | 70.18 % |
Parental protein coverage: | 85.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPG-G |
L.GYA.Q.LP.LL.ER...LGTLNKVFASQWLN.RQVVCGTKCNTLFVVDVQ...IT.IP...D.E.G.. | |
Retrocopy | LRGYAVQRLPELLTERQLDLGTLNKVFASQWLNARQVVCGTKCNTLFVVDVQSGHITRIPLMRDKEAGLA |
Parental | VTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWISDTMAVSGSRD |
..QQGCGIHAIELNPS.TLLATGG.NPNSLAIY.LPTLDP.C.GD..GHKDWIF..AW.SDT.AVSGSRD | |
Retrocopy | QAQQGCGIHAIELNPSKTLLATGGENPNSLAIYQLPTLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRD |
Parental | GSMGLWEVTDDVLTKSDARHSVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNSKNKELGAVSLDG |
G...LW....D....S.A.HS....PVYAHI..K....IP...TNP.N.KVRALAF..KN.ELGAVSLDG | |
Retrocopy | GTVALWRMDPDMFNGSIAWHSEVGLPVYAHIRPKDVEAIPRASTNPSNRKVRALAFSGKNQELGAVSLDG |
Parental | YFHLWKAENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIR |
YFHLWKA..TLS.LLS..LPYCRENVCL.Y..E.S.YAVGSQ.HVSFLDPRQ...N....CSRE.G.G.R | |
Retrocopy | YFHLWKARSTLSRLLSIRLPYCRENVCLTYCDELSLYAVGSQSHVSFLDPRQRQQNIRPLCSREGGTGVR |
Parental | SVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDI |
S.SFY.HIITVGTG.GSLLFYDIRAQ.FLEER.SA...S.P..AG..LKL..G.GWLN.D..W.NYF... | |
Retrocopy | SLSFYQHIITVGTGHGSLLFYDIRAQKFLEERASASLDSTPGPAGRKLKLACGRGWLNQDDVWVNYFGGM |
Parental | DFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS |
..FPNA.YTHCY.....KLFVAGGPLPSGLHGNYAGLWS | |
Retrocopy | EEFPNALYTHCYNWPEMKLFVAGGPLPSGLHGNYAGLWS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .01 RPM | 14 .01 RPM |
SRP007412_brain_prefrontal_cortex | 5 .24 RPM | 15 .95 RPM |
SRP007412_cerebellum | 0 .39 RPM | 20 .86 RPM |
SRP007412_heart | 0 .00 RPM | 11 .78 RPM |
SRP007412_kidney | 0 .00 RPM | 27 .58 RPM |
SRP007412_liver | 0 .75 RPM | 16 .15 RPM |
SRP007412_testis | 3 .20 RPM | 161 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000309 | 1 retrocopy | |
Bos taurus | ENSBTAG00000021573 | 3 retrocopies | |
Equus caballus | ENSECAG00000023064 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013279 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005881 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017458 | 1 retrocopy |
retro_mmul_202 ,
|
Nomascus leucogenys | ENSNLEG00000004996 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015799 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001281 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000019127 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008654 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010986 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006904 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014394 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010591 | 1 retrocopy |