Parental gene:

DCAF12, ENSEEUG00000013279

Aliases:None
Description:DDB1 and CUL4 associated factor 12 [Source:HGNC Symbol;Acc:19911]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_8582:841..61807(-)


>ENSEEUG00000013279
ATGGCCCGGAAAGCAGTTAGCAGGAAGCGGAAAGCGCCGGCCTCGCCGGGGGCTGGGAGCGACGCCCAGGGCCCACAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTATTTGTAGTTGATACCCAGACAAGCCAAATCACCAAAATTCCCATTCTGAAAGACCGGGAGCCTG
GAGGTGTGACCCAGCAGGGCTGTGGAATTCATGCCATCGAATTGAATCCCTCTAGAACATTGTTAGCCACTGGAGGAGAC
AACCCCAACAGTCTTGCCATCTACCGACTTCCTACACTGGATCCTGTGTGTGTGGGAGACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCACGTGATGGTTCAATGGGACTTTGGGAGGTGACAG
ATGATGTGTTGACTAAAAGTGATGCGATGCACAATGTGTCACGGGTCCCTGTGTATGCTCACATCACTCACAAGGCCTTA
AAGGATATCCCTAAGGAGAACACAAACCCTGACAACTGCAAGGTCCGGGCTCTGGCCTTTAACAATAAGAACAAGGAATT
GGGTGCAGTATCCCTGGATGGCTACTTTCATCTCTGGAAGGCTGAAAATACACTGACTAAGCTCCTCTCCACCAAACTGC
CATATTGCCGTGAGAATGTGTGTCTGGCCTACGGCAGTGAATGGTCAGTGTATGCAGTGGGCTCCCAAGCGCATGTCTCC
TTCCTGGACCCACGGCAGCCATCGTACAATGTCAAGTCTGTCTGCTCCAGGGAACAAGGCAGTGGGATCCGGTCAGTGAG
CTTCTATGAGCATATCATTACCGTGGGCACAGGGCAGGGCTCCTTGCTGTTCTATGACATCCGAGCTCAGAGATTCCTGG
AAGAGCGGCTCTCAGCTTATTGTGGATCCAAACCCAGGCTCGCAGGAGAAAATCTGAAACTAACCACTGGCAAAGGCTGG
CTAAATCATGATGAAACCTGGAGGAATTACTTCTCGGACATTGATTTCTTTCCCAATGCTGTTTACACCCACTGCTACGA
CTCGTCCGGAACGAAACTCTTTGTGGCAGGAGGTCCCCTCCCTTCAGGGCTCCATGGAAACTATGCTGGGCTCTGGAGTT
AA

Library Parental gene expression (RPM)
SRP017611_liver 13 .34 RPM
SRP017611_kidney 23 .63 RPM
SRP017611_brain 16 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000309 ortholog_one2one 1 retrogene
retro_amel_73,
Bos taurus ENSBTAG00000021573 ortholog_one2one 3 retrogenes
retro_btau_1794, retro_btau_1795, retro_btau_1796,
Equus caballus ENSECAG00000023064 ortholog_one2one 2 retrogenes
retro_ecab_1128, retro_ecab_1129,
Microcebus murinus ENSMICG00000005881 ortholog_one2one 1 retrogene
retro_mmur_14,
Macaca mulatta ENSMMUG00000017458 ortholog_one2one 1 retrogene
retro_mmul_202,
Nomascus leucogenys ENSNLEG00000004996 ortholog_one2one 1 retrogene
retro_nleu_6,
Otolemur garnettii ENSOGAG00000015799 ortholog_one2one 1 retrogene
retro_ogar_237,
Ochotona princeps ENSOPRG00000001281 ortholog_one2one 2 retrogenes
retro_opri_1178, retro_opri_470,
Pongo abelii ENSPPYG00000019127 ortholog_one2one 1 retrogene
retro_pabe_64,
Pteropus vampyrus ENSPVAG00000008654 ortholog_one2one 1 retrogene
retro_pvam_16,
Sus scrofa ENSSSCG00000010986 ortholog_one2one 1 retrogene
retro_sscr_17,
Ictidomys tridecemlineatus ENSSTOG00000006904 ortholog_one2one 1 retrogene
retro_itri_168,
Tarsius syrichta ENSTSYG00000014394 ortholog_one2one 1 retrogene
retro_tsyr_1965,
Tursiops truncatus ENSTTRG00000010591 ortholog_one2one 1 retrogene
retro_ttru_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_403 61.26 55.63
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Download FASTA sequences of all ENSEEUG00000013279 retrocopies