RetrogeneDB ID: | retro_mmul_2118 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:168640635..168641151(-) | ||
Located in intron of: | ENSMMUG00000003151 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1544 | ||
Ensembl ID: | ENSMMUG00000003363 | ||
Aliases: | None | ||
Description: | Krueppel-like factor 3 [Source:RefSeq peptide;Acc:NP_001248209] |
Percent Identity: | 78.65 % |
Parental protein coverage: | 51.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SLSEEMENSSSSMQVPVIESYEKPISQKKIKIEPGIEPQRTDYYPEEMSPPL-MNSVS-PPQALLQENHP |
S..EE.ENSS.S...PVIES.E.P.SQKKIKIEPGIEPQRTD.YPEEMSPPL.MNSVS.P.QALLQENH. | |
Retrocopy | SSMEETENSSGSL--PVIES*ENPVSQKKIKIEPGIEPQRTD-YPEEMSPPL>MNSVS<PLQALLQENHR |
Parental | SVIVQPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHRRTHTGEKPYKCTWEGCTWKFARSD |
.V.VQPGKRP.PVE.PDTQRK.RI.RCDY.GCNK.YT.SSHLKAHRR.HT.EKPYKCTWEGCTW.FA.SD | |
Retrocopy | LVVVQPGKRPVPVEFPDTQRKWRIRRCDYSGCNKMYTESSHLKAHRRPHT-EKPYKCTWEGCTWTFAPSD |
Parental | ELTRHFRKHTGIKPFQCPDCDRSFSRSDHLALHRKRHM |
EL.RH..KH.GIKP.QCPDC.RSFS.SDHLA.HRK.H. | |
Retrocopy | ELKRHLGKHIGIKPLQCPDCNRSFS*SDHLAFHRKCHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 21 .07 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .37 RPM |
SRP007412_cerebellum | 0 .58 RPM | 17 .82 RPM |
SRP007412_heart | 0 .24 RPM | 16 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 24 .88 RPM |
SRP007412_liver | 0 .16 RPM | 28 .38 RPM |
SRP007412_testis | 0 .79 RPM | 7 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017488 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004256 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003363 | 1 retrocopy |
retro_mmul_2118 ,
|
Macaca mulatta | ENSMMUG00000014678 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017046 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006524 | 1 retrocopy |