RetrogeneDB ID: | retro_mmul_2271 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:152490875..152491646(-) | ||
Located in intron of: | ENSMMUG00000019898 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAP2 | ||
Ensembl ID: | ENSMMUG00000001990 | ||
Aliases: | None | ||
Description: | adenylyl cyclase-associated protein 2 [Source:RefSeq peptide;Acc:NP_001253461] |
Percent Identity: | 67.94 % |
Parental protein coverage: | 53.46 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | VLKDYKHSDLRHVDWVK-SYLNIWSELQAYIKEHHTTGLTWSKTGPVASTVSAFSVLSSGPGLPPPPPPP |
VLK.YKH...R...W......NIWSE.QA.IKEHHTTGL.WS.TGP.A.T.SA.SVLS.GP.L.P.PPPP | |
Retrocopy | VLKGYKHTIYRV--WIG*GHVNIWSEFQACIKEHHTTGLLWSRTGPAAPT-SALSVLS*GPDLSPHPPPP |
Parental | PPPGP-PPLFENEGKKEESSPSRSALFAQLNQGEA---ITKGLRHVTDDQKTYKNPSLRAQGGQTRSPTK |
PPPGP.PPLFENE..KE.SSPS.SALFA.LNQGEA....T..L.........YKNPSL.A..GQT.S... | |
Retrocopy | PPPGP<PPLFENEDTKEKSSPSCSALFARLNQGEA*PGRTRALARHR*PEGLYKNPSLQAHRGQTASLPR |
Parental | SHTPSPTSPKSHPSQKHAPVLELEGKKWRVEYQEDRNDLVISETELKQVAYIFKCEKSTLQI-KGKVNSI |
SHTPSPTSPK.HPSQ.HAPV..LEG.KWR.EYQED.NDLVISETELK..AYIFKCEKSTL...KGK.... | |
Retrocopy | SHTPSPTSPKPHPSQTHAPVFKLEGRKWRAEYQEDTNDLVISETELKHAAYIFKCEKSTLPM>KGK*TPL |
Parental | I-IDNCKKLGLVFDNVVGIVEVINSQDIQIQVMGRVPTISINKTEGCHIYLS |
...DN.KK.G.VFD.V.GIVE..NS.DIQIQVMGRVP.IS.NKTEGCH.YL. | |
Retrocopy | Q*VDNRKKFGRVFDSVMGIVESTNSKDIQIQVMGRVPAISTNKTEGCHTYLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 205 .84 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 167 .07 RPM |
SRP007412_cerebellum | 1 .16 RPM | 71 .03 RPM |
SRP007412_heart | 0 .12 RPM | 47 .93 RPM |
SRP007412_kidney | 0 .12 RPM | 2 .23 RPM |
SRP007412_liver | 0 .20 RPM | 0 .36 RPM |
SRP007412_testis | 0 .00 RPM | 3 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1451 |
Pan troglodytes | retro_ptro_987 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009977 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008839 | 1 retrocopy | |
Homo sapiens | ENSG00000112186 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001990 | 1 retrocopy |
retro_mmul_2271 ,
|
Pan troglodytes | ENSPTRG00000017750 | 1 retrocopy |