RetrogeneDB ID: | retro_mmul_2312 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:127515836..127516547(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRS2 | ||
Ensembl ID: | ENSMMUG00000001018 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.49 % |
Parental protein coverage: | 53.95 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | AQLCGPG-RLRVAGEVHRLRTSDVSQATLASVAPVFTVTKFDKQGNVTSFEKKKTELYQELGLQARDLRF |
..LCGP...L.VAGE.H..RTSDVS.ATLA.VAPVFT.TKFDKQGNVTSFE.KK..L.QEL.LQ.RDLRF | |
Retrocopy | SDLCGPV<QLYVAGEMHWFRTSDVS*ATLANVAPVFTATKFDKQGNVTSFERKKMDLHQELSLQDRDLRF |
Parental | QHVMSITVRNNRIIMRMEYLKAVITPECLLILDYRNLNLEQWLFRELPSQLSGEGQLVTYPLPFEFRAIE |
QHVMSIT...NR.IM.MEYLKAVITPECLLILD..N..L........P......GQ.VTYPLPFEF.A.E | |
Retrocopy | QHVMSITTKSNRFIMTMEYLKAVITPECLLILDDGN-KLRAMAVPGTPFTVVRKGQPVTYPLPFEFSAME |
Parental | A-LLQYWINTLQGKLSILQPLILETLDALVDPKHSSVDRSKLHILLQNGKSLSELETDIKIFKESILEIL |
A..LQY.INTL..K...LQ.L..ETL.ALVD.KHSSVDRSKLHILL.N.KSLSELETDIK.F..SILEIL | |
Retrocopy | A<TLQYRINTL*RKRNVLQTLTPETLEALVDSKHSSVDRSKLHILL*NDKSLSELETDIKFFQDSILEIL |
Parental | DEEELLEELCLS-KWSDPQVFEKSSAGIDHAE |
DEE.LLEELCLS.K.S.P.VFEKSS.GI.HAE | |
Retrocopy | DEEKLLEELCLS<KMSAPRVFEKSSPGIHHAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .82 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .32 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .27 RPM |
SRP007412_heart | 0 .00 RPM | 12 .25 RPM |
SRP007412_kidney | 0 .12 RPM | 7 .39 RPM |
SRP007412_liver | 0 .00 RPM | 3 .29 RPM |
SRP007412_testis | 4 .33 RPM | 1 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4006 |
Pan troglodytes | retro_ptro_2720 |
Gorilla gorilla | retro_ggor_2689 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006424 | 1 retrocopy | |
Equus caballus | ENSECAG00000013105 | 1 retrocopy | |
Homo sapiens | ENSG00000124532 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009098 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001018 | 2 retrocopies |
retro_mmul_2312 , retro_mmul_878,
|
Pongo abelii | ENSPPYG00000016278 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017774 | 1 retrocopy |