RetrogeneDB ID: | retro_mmul_2323 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:20834879..20835386(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2685 | ||
Ensembl ID: | ENSMMUG00000019142 | ||
Aliases: | None | ||
Description: | transmembrane protein 97 [Source:RefSeq peptide;Acc:NP_001244680] |
Percent Identity: | 79.65 % |
Parental protein coverage: | 95.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PATRRC--VEWLLGIYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFKSFLF |
P..R.C...E.LLG..FL...PITLFM.LQ.VL..ELYPVEFRN.LKWYAKEFKD.LL.EP.AWFKSFLF | |
Retrocopy | PTDRQCHGMESLLGLFFLTRVPITLFMALQVVLLQELYPVEFRNVLKWYAKEFKDTLLWEPSAWFKSFLF |
Parental | CELVFQLPFFPIATYAFLKGCCKWIRTPA-IIYSVHTMTTLIPILSTFLFED-FSKASGFKGQRPETLHE |
..LVFQLPFFPIATYAFLKG.CKWI.TPA.IIYSV.TMTTLIPILSTFLFED.FSKASGFKGQRPETLHE | |
Retrocopy | YKLVFQLPFFPIATYAFLKGSCKWI*TPA>IIYSVPTMTTLIPILSTFLFED<FSKASGFKGQRPETLHE |
Parental | RLTLISVYAPYLLIPFILLIFMLRSPYYKYEE |
RL...SVYA.YLLIPF.LL.FML.SP.YKYEE | |
Retrocopy | RLSPVSVYALYLLIPFVLLMFMLQSP-YKYEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .26 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .68 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .71 RPM |
SRP007412_heart | 0 .00 RPM | 2 .59 RPM |
SRP007412_kidney | 0 .23 RPM | 9 .51 RPM |
SRP007412_liver | 0 .12 RPM | 27 .91 RPM |
SRP007412_testis | 0 .00 RPM | 18 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4027 |
Pan troglodytes | retro_ptro_2731 |
Gorilla gorilla | retro_ggor_2703 |
Pongo abelii | retro_pabe_3307 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011105 | 1 retrocopy | |
Homo sapiens | ENSG00000109084 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004565 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019142 | 1 retrocopy |
retro_mmul_2323 ,
|
Mus musculus | ENSMUSG00000037278 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001868 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003329 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008086 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008909 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007542 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005125 | 2 retrocopies |