RetrogeneDB ID: | retro_pabe_3307 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:20480989..20481494(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM97 | ||
Ensembl ID: | ENSPPYG00000008086 | ||
Aliases: | None | ||
Description: | transmembrane protein 97 [Source:HGNC Symbol;Acc:28106] |
Percent Identity: | 86.98 % |
Parental protein coverage: | 69.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | CVEWLLGLYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFKSFLFCELVFQL |
C.EWLLG.YFLSHIPITLFMDL.AVLP.ELYP.EFRNLLK.YAKEFKDPLLQEPPAWFKSFLFC.LVFQ. | |
Retrocopy | CMEWLLGFYFLSHIPITLFMDL*AVLPCELYPAEFRNLLKCYAKEFKDPLLQEPPAWFKSFLFCKLVFQV |
Parental | PFFPIATYAFLKGSCKWIRTPA-IIYSVHTMTTLIPILSTFLFEDFSKASGFKGQRPETLHERLTLVSVY |
PFFPIATYAFLKGSCKWI.TPA.IIYSVHTM.TLIP.LSTFLFEDFSKAS.F.G.RPETLH.RLT.VSVY | |
Retrocopy | PFFPIATYAFLKGSCKWI*TPA>IIYSVHTMMTLIPLLSTFLFEDFSKASCFQG*RPETLHKRLTPVSVY |
Parental | APYLVIPFVLLIFMLRSPYYKYEEKRKKK |
APYL.IP..LLIFML.SP.YKYEEKRKKK | |
Retrocopy | APYLLIPVLLLIFMLQSPHYKYEEKRKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .36 RPM |
SRP007412_heart | 0 .00 RPM | 0 .15 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .43 RPM |
SRP007412_liver | 0 .00 RPM | 4 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4027 |
Pan troglodytes | retro_ptro_2731 |
Gorilla gorilla | retro_ggor_2703 |
Macaca mulatta | retro_mmul_2323 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011105 | 1 retrocopy | |
Homo sapiens | ENSG00000109084 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004565 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019142 | 1 retrocopy | |
Mus musculus | ENSMUSG00000037278 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001868 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003329 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008086 | 1 retrocopy |
retro_pabe_3307 ,
|
Pan troglodytes | ENSPTRG00000008909 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007542 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005125 | 2 retrocopies |