>retro_mmul_2506
AAATCTCCAGGACCTCAGTGAGAAAGGAAGTCATCTGCATCCTCAGAAGACAGGAATCAAATGAAAATGCTTGGTAGACA
GGACTGGAACGATGATTGGGAGATTCCTGATGGGCAAATTACAGTGGGACAAAGAATTGGATCTAGATCATTTGGAACAG
TCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTATAAGCC
TTCAAAAATGAAGGAGGAGTGCTCAGGAAAACATAATATGTGAGTATCCTACTCTTCATGGGCTATTCAACAAAACCACA
ACTGGCTATTGTTACCCAGTGGTGTGAAGGCTCCAGCTTGTATTACCATCTCCGTATCATCGAGACCAAATTTGAGATGA
TCAAACTTACGGATATTGCACGACAGACTGCACAGGGCGTGGATTACTGACACGCCAAGTCAATCATCCATAGAGACCTC
AAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTGAAAATGGGTGATTTTGGTCTAGCCACAGTGAAATCTCGATG
GAGTGGGTCCCATCAGTTTGAACAGTTGTCTAGATCCTTTTTGTGGATGTCACCAGAAGTCATCAGAATGCGAGATAAAA
ATTCATACAGCTTTCAGTCACATGTATATGCATTTGGGATTTTTCTATATGAACTGATGACTGGACAGTTACCTTATTCA
AACATCAACAACAGGGACCAGATAATTATTATGGTGGGATGAGGATACCTATCTCCAGATCTCAGTAAGGTACAGAGTAA
CTGTCAAAAAGCCATGAACAGATTAATGGCAGAGTGCCTTAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTC
TCACCTCTATTGAGCTGCTGACCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACTCTCTTTGAATTGGGCTGAT
TTCCAAACAGAGGATTTTAGTCTATATGCTTGTTCTTTGGCAAAAACACCC
ORF - retro_mmul_2506 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
66.57 % |
Parental protein coverage: |
51.7 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KTPVPAQRERAPVSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILK |
| K.P.P.Q.ER.........N.....G..D....WEI.........RIGS.SFGTVYKGKWHGDVAVK.L. |
Retrocopy | KSPGP-Q*ERKSSASSEDRNQMKMLGRQDWNDDWEIPDGQITVGQRIGSRSFGTVYKGKWHGDVAVKMLN |
|
Parental | VVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDI |
| V..PTP.Q..AF.NE..VLRKT..V.ILLFMGY.TK..LAIVTQWCEGSSLY.HL...ETKF.M..L.DI |
Retrocopy | VTAPTPQQL*AFKNEGGVLRKT*YVSILLFMGYSTKPQLAIVTQWCEGSSLYYHLRIIETKFEMIKLTDI |
|
Parental | ARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIR |
| ARQTAQG.DY.HAK.IIHRD.KSNNIFLHE.LTVK.GDFGLATVKSRWSGS.Q.EQ...S.LWM.PEVIR |
Retrocopy | ARQTAQGVDY*HAKSIIHRDLKSNNIFLHEDLTVKMGDFGLATVKSRWSGSHQFEQLSRSFLWMSPEVIR |
|
Parental | MQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADC |
| M.D.N..SFQS.VY..GI.LYELMTG.LPYS.INNRDQII.MVG.GY.SPDLSK...NC.KAM.RL.A.C |
Retrocopy | MRDKNSYSFQSHVYAFGIFLYELMTGQLPYSNINNRDQIIIMVG*GYLSPDLSKVQSNCQKAMNRLMAEC |
|
Parental | VKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRA-AHTEDIN--ACTLTTSP |
| .KK...ERPLFPQIL.SIELL..SLPKI.RSASE.SL..A...TED....AC.L...P |
Retrocopy | LKKKRDERPLFPQILTSIELLTRSLPKIHRSASELSLNWADFQTEDFSLYACSLAKTP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
1 .12 RPM |
57 .26 RPM |
SRP007412_brain_prefrontal_cortex |
2 .22 RPM |
57 .59 RPM |
SRP007412_cerebellum |
1 .29 RPM |
87 .18 RPM |
SRP007412_heart |
0 .71 RPM |
64 .72 RPM |
SRP007412_kidney |
1 .06 RPM |
71 .24 RPM |
SRP007412_liver |
0 .91 RPM |
58 .54 RPM |
SRP007412_testis |
23 .67 RPM |
35 .39 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2506 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2506 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2506 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.