RetrogeneDB ID: | retro_mmul_2556 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:23035249..23035971(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METTL1 | ||
Ensembl ID: | ENSMMUG00000022148 | ||
Aliases: | None | ||
Description: | methyltransferase like 1 [Source:HGNC Symbol;Acc:7030] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 87.68 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAAETWNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKK |
MAA.TWNVA.AEAP.PQK.YYR.RA.SNPMADHTLRYPVKPEEMD.SELYPEFFAPLTQNQSHDDPK.K. | |
Retrocopy | MAAKTWNVARAEAPQPQKHYYR*RAGSNPMADHTLRYPVKPEEMDLSELYPEFFAPLTQNQSHDDPKGKR |
Parental | EKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPGGGFQNIACLRSN |
EKRAQAQ.EFAD.GCGYGGLLVELSPLFPDTLILGLEI.VKVSDYVQD.I.ALRAAPGGGFQNIA.L.SN | |
Retrocopy | EKRAQAQAEFADTGCGYGGLLVELSPLFPDTLILGLEIWVKVSDYVQDWIQALRAAPGGGFQNIAYLCSN |
Parental | AMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTH |
AMKHLPN.FYKGQLTKMFFLFP.PHFK.TKHKW.IISPTLLA..AYVLRVGGLVYTIT.VLELHDWMCTH | |
Retrocopy | AMKHLPN-FYKGQLTKMFFLFPNPHFKQTKHKWQIISPTLLAKCAYVLRVGGLVYTITYVLELHDWMCTH |
Parental | FEEHPLFERVPL-EDLSEDPIVGHLGTSTEEGK |
FEEH.LFE.VPL.EDLS.DPIVGHLGTSTEEGK | |
Retrocopy | FEEHLLFEHVPL<EDLS*DPIVGHLGTSTEEGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .24 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .42 RPM |
SRP007412_heart | 0 .00 RPM | 3 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .96 RPM |
SRP007412_liver | 0 .00 RPM | 10 .05 RPM |
SRP007412_testis | 0 .00 RPM | 7 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4796 |
Gorilla gorilla | retro_ggor_2985 |
Pongo abelii | retro_pabe_3730 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006615 | 1 retrocopy | |
Homo sapiens | ENSG00000037897 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001411 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003803 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022148 | 1 retrocopy |
retro_mmul_2556 ,
|
Nomascus leucogenys | ENSNLEG00000017183 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004706 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011522 | 1 retrocopy |