RetrogeneDB ID:

retro_nleu_1110

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397281.1:22633180..22634004(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:METTL1
Ensembl ID:ENSNLEG00000017183
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1110
ATGACAGCTGAGACTTGGAACGTGGCCGGAGCAGAGGCCCCGCAGCCCCCGAAGCACTACTACCGGCGACATGCTCACTC
CAACCCCATGGCAGACCACACACTGTGCTATCCTGGGAAGCCAGAGGAGATGGACTGGTCTGAGCTAGACCCAGAGTTCT
TCGTTCCACTCGCTCAAAATCAGAGCCACGATGACCCAAAGGATAAGAAAGAAAAGAGAGCTCAGGCCCAAGTGGAGTCT
GCAGACATAGGCTGTGGCTATGGTGGCCTGTTAGTGGAACTATCACCACTGTTCCCAGACACACTGATTCTGGGTCTGGA
GATCCAGGTGAAGGTCTCAGACTACGTACAAGACCAGATTTGGGCCCTACGCACAGCTCCTGGAGGCGGCTTCCAGAACA
TTGCCTGTCTCTGTAGCAATGCCATGAAGCACCTTCCTAACTTCTACAAGGCCAGCTGACAAAGACGTTCTTCCTCTTCC
CCGACCCACATTTCAAGCAGACAAAGTACAAGTGGCAAATCATCAGTCCCACTCTGCTAGCAAAATATGCCTATGTGCTG
AGAGTTGGGGGGCTGGTATGTACCATAACCCATGTGCTGGAGCTACACGACTGGATATGCACCCATTTTGAAGAGCACCC
GCTGTTTGAGCGTATGCCTCTGGAGGACCTGAGTGAAGACCCCATTGTGGGACATCTAGGTACCTCAACTGAGGAGGGGA
AGAAAATTCTACGTAATGGAGGGAAGAATTTCCCAGCCATCTTTCAAAGAATACAAGATCCCATCCTCCAGGCAGTGACC
CCCCAAACCAGCCTGCCTGGTCAC

ORF - retro_nleu_1110 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.36 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAAETWSVAGAEAPTPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPAFFAPLTQNQSHDDPKDKK
M.AETW.VAGAEAP.P.K.YYR..AHSNPMADHTL.YP.KPEEMDWSEL.P.FF.PL.QNQSHDDPKDKK
RetrocopyMTAETWNVAGAEAPQPPKHYYRRHAHSNPMADHTLCYPGKPEEMDWSELDPEFFVPLAQNQSHDDPKDKK
ParentalEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN
EKRAQAQVE.ADIGCGYGGLLVELSPLFPDTLILGLEI.VKVSDYVQD.I.ALR.AP.GGFQNIACL.SN
RetrocopyEKRAQAQVESADIGCGYGGLLVELSPLFPDTLILGLEIQVKVSDYVQDQIWALRTAPGGGFQNIACLCSN
ParentalAMKHLPNFFYK-GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCT
AMKHLPN.FYK.GQLTK.FFLFPDPHFK.TK.KW.IISPTLLA.YAYVLRVGGLV.TIT.VLELHDW.CT
RetrocopyAMKHLPN-FYK<GQLTKTFFLFPDPHFKQTKYKWQIISPTLLAKYAYVLRVGGLVCTITHVLELHDWICT
ParentalHFEKHPLFERVPLEDLSEDPIVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQAVTPQTSLPGH
HFE.HPLFER.PLEDLSEDPIVGHLGTSTEEGKK.LRNGGKNFPAIF.RIQDP.LQAVTPQTSLPGH
RetrocopyHFEEHPLFERMPLEDLSEDPIVGHLGTSTEEGKKILRNGGKNFPAIFQRIQDPILQAVTPQTSLPGH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1110 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000066151 retrocopy
Homo sapiens ENSG000000378971 retrocopy
Gorilla gorilla ENSGGOG000000014111 retrocopy
Microcebus murinus ENSMICG000000038031 retrocopy
Macaca mulatta ENSMMUG000000221481 retrocopy
Nomascus leucogenys ENSNLEG00000017183 1 retrocopy
retro_nleu_1110 ,
Pongo abelii ENSPPYG000000047061 retrocopy
Tupaia belangeri ENSTBEG000000115221 retrocopy



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