RetrogeneDB ID: | retro_mmul_258 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 6:112498762..112499404(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMMUG00000022192 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MMU.3268 | ||
| Ensembl ID: | ENSMMUG00000011434 | ||
| Aliases: | None | ||
| Description: | pyrroline-5-carboxylate reductase 2 [Source:RefSeq peptide;Acc:NP_001248709] |
Retrocopy-Parental alignment summary:
>retro_mmul_258
ATGGGTGTGAACCTGACACGCAGCAACAAGGAGACAGTGAAGCACAGCGACGTCCTGTTTCTGGCCGTGAAGCCACATAT
CATCCCCTTCATTCTGGATGAGATTGGGGCCGATGTACAAGCCAGACACATCGTGGTCTCCTGTGCGGCTGGTGTCACCA
TCAGCTCTGTGGAGAAGAAGCTGATGGCGTTCCAGCCAGCCCCCAAAGTGATTCGCTGCATGACCAACTCACCTGTGGTA
GTGCGGGAAGGCGCTACAGTGTACGCCATGGGCACCCATGCTCTGGTGGAGGATGGGCAGCTCCTGGAGCAGCTCATGAG
CAGCGTGGGCTTCTGCACTGAGGTGGAAGAGGACCTCATCGATGCCGTCACGGGGCTCAGTGGCAGCGGGCCTGCCTATG
CATTCATGGCTCTGGATGCATTGGCTGATGGTGGGGTGAAGATGGGTTTGCCACGGCGCCTGGCAGTCCGACTCGGGGCC
CAGGCCTTGCTGGGAGCTGCCAAGATGCTGCTGGACTCAGAGCAGCATCCATGCCAGCTCAAGGACATTGTCTGCTCCCC
TGGGGGAGCCACCATCCATGCCCTGCACTTTCTGGAGAGTGGGGGCTTCCGCTCTCTGCTCATCAATGCAGTTGAGGCCT
CC
ORF - retro_mmul_258 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.07 % |
| Parental protein coverage: | 75.35 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MGVNLTRSNKETVKHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKV |
| MGVNLTRSNKETVKHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKV | |
| Retrocopy | MGVNLTRSNKETVKHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKV |
| Parental | IRCMTNTPVVVREGATVYAMGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDA |
| IRCMTN.PVVVREGATVYAMGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDA | |
| Retrocopy | IRCMTNSPVVVREGATVYAMGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDA |
| Parental | LADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHALHFLESGGFRSLLINA |
| LADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPCQLKD.VCSPGGATIHALHFLESGGFRSLLINA | |
| Retrocopy | LADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPCQLKDIVCSPGGATIHALHFLESGGFRSLLINA |
| Parental | VEAS |
| VEAS | |
| Retrocopy | VEAS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 3 .14 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .28 RPM |
| SRP007412_cerebellum | 0 .06 RPM | 3 .42 RPM |
| SRP007412_heart | 0 .00 RPM | 4 .65 RPM |
| SRP007412_kidney | 0 .00 RPM | 4 .58 RPM |
| SRP007412_liver | 0 .00 RPM | 8 .47 RPM |
| SRP007412_testis | 0 .04 RPM | 11 .42 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_258 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_258 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_258 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Loxodonta africana | ENSLAFG00000002110 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000011434 | 1 retrocopy |
retro_mmul_258 ,
|
| Otolemur garnettii | ENSOGAG00000024897 | 2 retrocopies |