RetrogeneDB ID: | retro_mmul_2586 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:63992308..63992736(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4817 | ||
Ensembl ID: | ENSMMUG00000008295 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.69 % |
Parental protein coverage: | 63.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SGGTAPVPAPSGPDRGQPLAAAVAELPVLDARGQRVPFGALFRERRAVVVFVRHFLCYICKEYVEDLAKI |
SGG.APV.A.SGP..GQ.L.AA.AELPVLD..GQ.VPFGAL.RERR..V.FV.HFL.YICKEYVE.L.KI | |
Retrocopy | SGGVAPVQALSGPEHGQSLVAAIAELPVLDSHGQWVPFGALLRERRTMVLFVQHFLFYICKEYVEAL*KI |
Parental | PKSFLQEANVTLIVIGQSSYHHIEPFCRLTGYSHEIY-VDPEREIYKRLGMKRGEEIASSGQSPHVKSNL |
.KSFLQEANV.LIVI.QSSYH.IEPFC.L.GYSHEIY...PEREIYKRLGMKRGEE.ASSGQSPHV.S.. | |
Retrocopy | LKSFLQEANVILIVIEQSSYHPIEPFCKLPGYSHEIY<FHPEREIYKRLGMKRGEEMASSGQSPHVNSQE |
Parental | LSGS |
..G. | |
Retrocopy | AFGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .35 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .38 RPM |
SRP007412_cerebellum | 0 .06 RPM | 3 .42 RPM |
SRP007412_heart | 0 .00 RPM | 6 .12 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .39 RPM |
SRP007412_liver | 0 .00 RPM | 4 .51 RPM |
SRP007412_testis | 0 .00 RPM | 6 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006422 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007723 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000005509 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000024562 | 4 retrocopies | |
Homo sapiens | ENSG00000158122 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008295 | 1 retrocopy |
retro_mmul_2586 ,
|
Otolemur garnettii | ENSOGAG00000017058 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000003177 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019418 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021156 | 1 retrocopy |