>retro_mmul_552
ATGGCATCGTGTGCTGAACCCTCTGAGCCCTCTGCCCCCGCCTCCTGCCAGGGTCCCACTGCTCGAGGACTTCGAGGTGC
TGGATGGGGTCGAGAATGCAGAGGGCAAGGAGGGAGAGGAGGAGGAAGATGACCTTAGAGAGCTGCCACTGCTGGAGGAC
ATGGGACAGCCCCTGGTGGAAGAGACTGAACAGGCCGGGACCTTGGCCCGAGAGTTCCTCACTGCCATGGAGCCTGAGCC
TGCCCCGTCCCCGGCCCCAGAAGAGTGGCCAGACATAACCAGCTGTTGAGGAAGAAGACGCTTGTCCCAGGGCCACCGGA
TTTGAGCTGCTCAGTCAAGGGCCAGGTGGTCACCATGCATTTGCAGACATCACAAGAGAATGGCATGTGGGTGCAGGAGG
AGCCGGAGCTAGTGTTCACCCTGAGCGTCTGTGAGGTCATCCAGGCCCTGGATCTCAGTGTCTAACTCATGGACGTGGGG
GAGGCAGCCATGGTCACTGCTGACTGCATGTACTGCTACAGCCCCCAGGACAGGAGCCCATACATCCCCCGCACGCGGCC
CTATGCCTGGAGGTGACCCCGAAGATGGCCGTGGACTGGCCTGACCTGGAGATGCTCATAGGGCAGGAGCGCGTGGCCTT
GGCCAACCGGAAGTGGGAGTGCGGCAGTGCCCACTACCAGTGGGCGGACTTCGTCCTGGCCACCAACTCCTATGACCTTG
CCATCAAGACCGTCACCTCCAGCGCCAAAGTGGACATGACGTTCGAGGAGGAGAAGCAGCTCCTGCAGTTGAGGGTGAGG
TGTCTGAACAACCTGGTGGCCTCACAGGTGAAGCTCGACCACTACTGCGCAGCCCTGTGCTCCTGCAACCTCGTG
ORF - retro_mmul_552 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.41 % |
Parental protein coverage: |
72.33 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MASCAEPSEPSAPL-PAGVPPLEDFEVLDGVEDAEGEEEEEEEEEEEDDLSELPPLEDMGQPPVEEAEQP |
| MASCAEPSEPSAP..PA.VP.LEDFEVLDGVE.AEG.....E.EEEEDDL.ELP.LEDMGQP.VEE.EQ. |
Retrocopy | MASCAEPSEPSAPA>PARVPLLEDFEVLDGVENAEGK----EGEEEEDDLRELPLLEDMGQPLVEETEQA |
|
Parental | GALAREFLAAMEPEPAPA-PAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQ |
| G.LAREFL.AME..P.PA.P.P........N.LLRKKTLVPGPP..S..VKGQVVT.HLQTS.ENG..VQ |
Retrocopy | GTLAREFLTAME--PEPA<PVPGPRRVARHNQLLRKKTLVPGPPDLSCSVKGQVVTMHLQTSQENGMWVQ |
|
Parental | EEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIP-PHAALCLEVTLKTAVDGP |
| EEPELVFTL..C.VIQALDLSV.LMDVGE.AMVTAD..YCY.PQ.RSPYIP.PHAALCLEVT.K.AVD.P |
Retrocopy | EEPELVFTLSVCEVIQALDLSV*LMDVGEAAMVTADCMYCYSPQDRSPYIP<PHAALCLEVTPKMAVDWP |
|
Parental | DLEMLTGQERVALANRKRECGNAHYQRADFVLAANSYDLAIKAITSSAKVDMTFEEEAQLLQLKVKCLNN |
| DLEML.GQERVALANRK.ECG.AHYQ.ADFVLA.NSYDLAIK..TSSAKVDMTFEEE.QLLQL.V.CLNN |
Retrocopy | DLEMLIGQERVALANRKWECGSAHYQWADFVLATNSYDLAIKTVTSSAKVDMTFEEEKQLLQLRVRCLNN |
|
Parental | LAASQLKLDHYRAALRSCSLV |
| L.ASQ.KLDHY.AAL.SC.LV |
Retrocopy | LVASQVKLDHYCAALCSCNLV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .11 RPM |
108 .46 RPM |
SRP007412_brain_prefrontal_cortex |
0 .08 RPM |
524 .61 RPM |
SRP007412_cerebellum |
0 .00 RPM |
71 .87 RPM |
SRP007412_heart |
0 .18 RPM |
63 .48 RPM |
SRP007412_kidney |
0 .00 RPM |
56 .81 RPM |
SRP007412_liver |
0 .00 RPM |
221 .79 RPM |
SRP007412_testis |
0 .15 RPM |
336 .83 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_552 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_552 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_552 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.