Parental gene:

MMU.13849, ENSMMUG00000016512

Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:F7G0S7]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:7:108287286..108306859(-)


>ENSMMUG00000016512
ATGGCGGCGGCTGTTCCACAGCGGGCGTGGACCGTGGAGCAGCTGCGCAGTGAGCAGCTGCCCAAGAAGGACATTATCAA
GTTTCTGCAGGAACACGGTTCAGATTCGTTTCTTGCAGAACATAAATTATTAGGAAACATTAAAAATGTGGCCAAGACAG
CTAACAAGGACCACTTGGTTACAGCCTATAACCATCTTTTTGAAACTAAGCGTTTTAAGGGTACTGAAAGTATAAGTAAA
GTGTCTGAGCAAGTAAAAAATGTGAAGCTTAATGAAGATAAACCCAAAGAAACCAAGTCTGAAGAGACCCTGGATGAGGG
TCCACCAAAATATACTAAATCTGTTCTGAAAAAGGGAGATAAAACCAACTTTCCCAAAAAGGGAGATGTTGTTCATTGCT
GGTATACAGGAACACTACAAGATGGGACTGTTTTTGATACTAATATTCAAACAAGTGCAAAGAAGAAGAAAAATGCCAAG
CCTTTAAGTTTTAAGGTCGGAGTAGGCAAAGTTATCAGAGGATGGGATGAAGCCCTCTTGACTATGAGTAAAGGAGAAAA
GGCTCGACTGGAGATTGAACCAGAATGGGCTTATGGAAAGAAAGGACAGCCTGATGCCAAAATTCCACCAAATGCAAAAC
TCATTTTTGAAGTGGAATTAGTGGATATTGACTGA

Library Parental gene expression (RPM)
SRP007412_brain 33 .95 RPM
SRP007412_brain_prefrontal_cortex 22 .85 RPM
SRP007412_cerebellum 30 .61 RPM
SRP007412_heart 42 .93 RPM
SRP007412_kidney 15 .49 RPM
SRP007412_liver 5 .23 RPM
SRP007412_testis 20 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014018 ortholog_one2many 4 retrogenes
retro_cfam_1788, retro_cfam_440, retro_cfam_616, retro_cfam_798,
Felis catus ENSFCAG00000027304 ortholog_one2one 1 retrogene
retro_fcat_1894,
Loxodonta africana ENSLAFG00000003572 ortholog_one2many 2 retrogenes
retro_lafr_357, retro_lafr_76,
Macropus eugenii ENSMEUG00000004962 ortholog_one2one 1 retrogene
retro_meug_679,
Macaca mulatta ENSMMUG00000007405 other_paralog 1 retrogene
retro_mmul_1969,
Macaca mulatta ENSMMUG00000009587 within_species_paralog 1 retrogene
retro_mmul_552,
Macaca mulatta ENSMMUG00000012341 other_paralog 1 retrogene
retro_mmul_2171,
Macaca mulatta ENSMMUG00000015996 other_paralog 1 retrogene
retro_mmul_10,
Monodelphis domestica ENSMODG00000007352 ortholog_one2one 1 retrogene
retro_mdom_1554,
Mus musculus ENSMUSG00000020949 ortholog_one2one 1 retrogene
retro_mmus_1322,
Otolemur garnettii ENSOGAG00000003012 possible_ortholog 2 retrogenes
retro_ogar_2247, retro_ogar_3472,
Rattus norvegicus ENSRNOG00000004629 ortholog_one2one 1 retrogene
retro_rnor_1165,
Tupaia belangeri ENSTBEG00000006017 ortholog_one2one 13 retrogenes
retro_tbel_1032, retro_tbel_1125, retro_tbel_1696, retro_tbel_1783, retro_tbel_2151, retro_tbel_2569, retro_tbel_3297, retro_tbel_3567, retro_tbel_3807, retro_tbel_4222, retro_tbel_4482, retro_tbel_730, retro_tbel_800,
Tursiops truncatus ENSTTRG00000006664 ortholog_one2one 1 retrogene
retro_ttru_1041,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_735 92.44 52.68
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2. retro_mmul_2094 92.92 100.00
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Download FASTA sequences of all ENSMMUG00000016512 retrocopies