RetrogeneDB ID: | retro_mmul_722 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214749240:165..616(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C10ORF84 | ||
Ensembl ID: | ENSMMUG00000012741 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MWSGLLPPGLNESDAESNSEDEATLENSGLNLQEDKEDESIRKTEIID-FSTDEPQTETESNV-NAYEEC |
MWSGLLPPGLNESD.E.NSEDE.TLE.SGLNLQEDKED.SIRKTEIID.FS.DEP.TETESNV.NAYEE. | |
Retrocopy | MWSGLLPPGLNESDVE*NSEDEGTLEDSGLNLQEDKEDGSIRKTEIID<FSIDEPKTETESNV<NAYEES |
Parental | PSGIPVDMWNKFQELHKKHTEQKSTTSRFRGKKRKRSRKDKSKNEKESHSETSSNETQWKELTQYFGVND |
P.GIP.DM.NKFQELHKKH.EQK..TS.FRGKKRKRSRKDK...EKESHSE.SSNETQWKELTQYFGV.D | |
Retrocopy | PFGIPLDM*NKFQELHKKHSEQKNATSSFRGKKRKRSRKDKLRSEKESHSEQSSNETQWKELTQYFGVSD |
Parental | RFDPPVKRKKVEK |
RFDP.VK.KKVEK | |
Retrocopy | RFDPHVKGKKVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .98 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .52 RPM |
SRP007412_heart | 0 .00 RPM | 12 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .39 RPM |
SRP007412_liver | 0 .00 RPM | 2 .10 RPM |
SRP007412_testis | 0 .00 RPM | 45 .01 RPM |