RetrogeneDB ID: | retro_mmul_851 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 11:26600616..26601351(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000007050 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4849 | ||
Ensembl ID: | ENSMMUG00000009590 | ||
Aliases: | EIF4A3, DDX48 | ||
Description: | eukaryotic initiation factor 4A-III [Source:RefSeq peptide;Acc:NP_001253345] |
Percent Identity: | 95.51 % |
Parental protein coverage: | 59.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDP |
VFDMIR..SLRT.AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDP | |
Retrocopy | VFDMIRHGSLRTCAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDP |
Parental | IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS |
I.IL.KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS | |
Retrocopy | IHILAKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS |
Parental | MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV |
MHGDMPQKERESIMKEFRSGA.RVLISTDVWARGLDVP.VSLIINYDLPNNRELYIH.IGRSGRYGRKGV | |
Retrocopy | MHGDMPQKERESIMKEFRSGARRVLISTDVWARGLDVPHVSLIINYDLPNNRELYIHKIGRSGRYGRKGV |
Parental | AINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI |
AIN.VKN.DIRILRD.EQYYSTQIDEMPMNVADLI | |
Retrocopy | AINLVKNNDIRILRDTEQYYSTQIDEMPMNVADLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 19 .61 RPM |
SRP007412_brain_prefrontal_cortex | 0 .32 RPM | 29 .99 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .67 RPM |
SRP007412_heart | 0 .00 RPM | 21 .32 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .69 RPM |
SRP007412_liver | 0 .00 RPM | 25 .18 RPM |
SRP007412_testis | 0 .04 RPM | 54 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Microcebus murinus | ENSMICG00000009136 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009585 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003702 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000009590 | 1 retrocopy |
retro_mmul_851 ,
|
Macaca mulatta | ENSMMUG00000013499 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002190 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000000334 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007495 | 1 retrocopy |