RetrogeneDB ID:

retro_mmur_1462

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_6461:18339..20216(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MTHFD1
Ensembl ID:ENSMICG00000013011
Aliases:None
Description:methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase [Source:HGNC Symbol;Acc:7432]


Retrocopy-Parental alignment summary:






>retro_mmur_1462
GTTGGCGACAGAGATGATTCCAATCTTTATATAAATGTGAAGCTGAAGGCTGCTGAAGAGGTTGGGATCAAAGCCACTCA
CGTTAAATTACCAAGAACAGCCACAGAATCTGAGGTGTTAAAGTACATTAGATCTTTGAATGAAGACTCTACCATACATG
GATTCATACTGCAGCTACCTTTAGATTCAGAAAATGCTATCAACACTGAAGCAGTGATCAATGCTATCGCACCCGAAAAG
GATGTGGATGGATTGACTAGTATCAGTGCTGGGAAACTCTCTAGAGGTGATCTAAATGACTATTTCATCCCTTGTACGCC
TAAAGGATGCTTGGAACTCATCAAAGAGACAGGGGTGCCGATCGCCGGAAAGCATGCCGTGGTGGCTGGGCGCAGTAAAA
TAGTAGGAGCCCCAGTGCATGACTTGCTTCTGTGGAACAATGCCACAGTGACCACCTGCCACTCCAAGACTGCCAACCTG
GGCGAGGAGGTAAATAAAGGTGACATCCTGGTGGTTGCAACTGGTCAGCCTGAATGGTGAAAGGAGAGTGGATCAAACCT
GGGGCAATAGTCATCGACTGTGGGATCAATTATATCCCAGATGATACAAAATCAAACGGGAGAAGGATTGTGGGTGATGT
GGCATACAAGGAGGCCAAAGAGCGGGCGGGCTTCATCACTCCTGTTCCTGGCGGCGTCGGGCCCATGACGGTGGCCATGC
TGATGCAGAGCACGGTAGAGAGTGCAAGGGGTTTCCTGGAGAAATACAAGCCAGGAAAGTGGAGTATTCAGTATAACAAC
CTTAACCTGAAGACACCTGTTCCAAGTGACATTGCTATATCACGATCTTGCAAACCAAAGCGCATTAGCACGCTGGCTCG
AGAAATTGGCCTGTTCTCTGAAGAGGTGGAATAGTATGGTGAGACAAAGGCCAAAGTCCTGCTGTCAGCACTGGAACGCC
TGAAACACCAGCCTGACGGGAAATACGTGGTGGTGACTGGAATAACTCCAGTGCCCCTGGGAGAAGGGAAAAGTACAACC
ACAATCGGGCTGGTGCAACCCTGGGTGCCCATCTTTTCCAGAATGTCTTTGCGTGTGTGCGACAGCCTTCCCAGGGCCCC
CACCTTTGGAATAAAAGGTGGTGCTGCAGGAGGCGGCTACTCCCAGGTCATTCCTAGGGAAGAGTTTAATCTCCACCTCA
CTGGTGACATCCATGCCATCACTGCAGCTAATAACCTGCTTGCTGCGGCCATTGATGCCCGGATATTCCATGAACTGACC
CAGACAGACAAGGCTCTCTTTAATCGTTTGGTGCCCTCAGTAAATGGAGTGAGAAAGTTCTCTGATATCCAAACCCGAAG
GTTAAGGAGACTAGGCATTGAAAAGACTGACCCTACCACACTGACAGACGAAGAGATAAACAGATTTGCAAGATTGGATA
TTGATCCAGAAACCATAACTTGGCAAAGAGTGTTGGATACCAATGATAGATTCCTGCGGAAGATCACAATTGGACAGGCT
CCAACGGAGAAAGGGCACACACGGACGACCCAGTTTGATATCTCAGTTGCCAGTGAGATCATGGCTGTCCTGGCCCTCAC
CAGTTCTCTGGAAGACATGAGAGAGAGACTGGGCAAAATGGTGGTGGCCTCCAGCAAGAAAGGGGAGCCCATCAGTGCCA
AAGACCTGGGGGTGAGTGGCGCGTTGACAGTGCTTATGAAGGACGCGATCAAGCCTAACCTCATGCAGATGTTAGAGGGC
ACTCCAGTGTTTGTCCACGCCGGCCCCTTCGCCAACATCGCACATGGCAATTCGTCTATCATCGCAGACCGGGTCGCACT
CAAGCTTGTCAGCCCAGAAGGGTTTGTAGTGACCGAA

ORF - retro_mmur_1462 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.18 %
Parental protein coverage: 69.03 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalVGDRDDSNLYINVKLKAAEEVGIKATHVKLPRTATESEV-KYIRSL-EDSTIHGFILQLPLDSENAINTE
VGDRDDSNLYINVKLKAAEEVGIKATHVKLPRTATESEV.KYIRSL.EDSTIHGFILQLPLDSENAINTE
RetrocopyVGDRDDSNLYINVKLKAAEEVGIKATHVKLPRTATESEVLKYIRSLNEDSTIHGFILQLPLDSENAINTE
ParentalAVINAIAPEKDVDGLTSISAGKLSRGDLNDCFIPCTPKGCLELIKETGVQIAGKHAVVVGRSKIVGAPMH
AVINAIAPEKDVDGLTSISAGKLSRGDLND.FIPCTPKGCLELIKETGV.IAGKHAVV.GRSKIVGAP.H
RetrocopyAVINAIAPEKDVDGLTSISAGKLSRGDLNDYFIPCTPKGCLELIKETGVPIAGKHAVVAGRSKIVGAPVH
ParentalDLLLWNNATVTTCHSKTANLGEEVNKGDILVVATGQPE-MVKGEWIKPGAIVIDCGINYIPDNTKSNGRR
DLLLWNNATVTTCHSKTANLGEEVNKGDILVVATGQPE.MVKGEWIKPGAIVIDCGINYIPD.TKSNGRR
RetrocopyDLLLWNNATVTTCHSKTANLGEEVNKGDILVVATGQPE<MVKGEWIKPGAIVIDCGINYIPDDTKSNGRR
ParentalIVGDVAYNEAKERAGFITPVPGGVGPMTVAMLMQSTVESARGFLEKYKPGKWSIQYNNLNLKTPVPSDIA
IVGDVAY.EAKERAGFITPVPGGVGPMTVAMLMQSTVESARGFLEKYKPGKWSIQYNNLNLKTPVPSDIA
RetrocopyIVGDVAYKEAKERAGFITPVPGGVGPMTVAMLMQSTVESARGFLEKYKPGKWSIQYNNLNLKTPVPSDIA
ParentalISRSCKLKPIGTLAREIGLLSEEVELYGETKAKVLLSALERLKHQPDGKYVVVTGITPTPLGEGKSTTTI
ISRSCK.K.I.TLAREIGL.SEEVE.YGETKAKVLLSALERLKHQPDGKYVVVTGITP.PLGEGKSTTTI
RetrocopyISRSCKPKRISTLAREIGLFSEEVE*YGETKAKVLLSALERLKHQPDGKYVVVTGITPVPLGEGKSTTTI
ParentalGLVQ-ALGAHLFQNVFACVRQPSQG-PTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAA
GLVQ..LGAHLFQNVFACVRQPSQG.PTFGIKGGAAGGGYSQVIP.EEFNLHLTGDIHAITAANNL.AAA
RetrocopyGLVQ<TLGAHLFQNVFACVRQPSQG>PTFGIKGGAAGGGYSQVIPREEFNLHLTGDIHAITAANNLLAAA
ParentalIDARIFHELTQTDKALFNRLVPSVNGVRKFSDIQIRRLRRLGIEKTDPTTLTDEEINRFARLDIDPETIT
IDARIFHELTQTDKALFNRLVPSVNGVRKFSDIQ.RRLRRLGIEKTDPTTLTDEEINRFARLDIDPETIT
RetrocopyIDARIFHELTQTDKALFNRLVPSVNGVRKFSDIQTRRLRRLGIEKTDPTTLTDEEINRFARLDIDPETIT
ParentalWQRVLDTNDRFLRKITIGQAPTEKGHTRTTQFDISVASEIMAVLALTSSLEDMRERLGKMVVASSKKGEP
WQRVLDTNDRFLRKITIGQAPTEKGHTRTTQFDISVASEIMAVLALTSSLEDMRERLGKMVVASSKKGEP
RetrocopyWQRVLDTNDRFLRKITIGQAPTEKGHTRTTQFDISVASEIMAVLALTSSLEDMRERLGKMVVASSKKGEP
ParentalISAEDLGVSGALTVLMKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRVALKLVGPEGFVVTE
ISA.DLGVSGALTVLMKDAIKPNLMQ.LEGTPVFVHAGPFANIAHGNSSIIADRVALKLV.PEGFVVTE
RetrocopyISAKDLGVSGALTVLMKDAIKPNLMQMLEGTPVFVHAGPFANIAHGNSSIIADRVALKLVSPEGFVVTE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1462 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1462 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000159671 retrocopy
Homo sapiens ENSG000001007141 retrocopy
Gorilla gorilla ENSGGOG000000052511 retrocopy
Microcebus murinus ENSMICG00000013011 6 retrocopies
Macaca mulatta ENSMMUG000000013191 retrocopy
Pan troglodytes ENSPTRG000000064351 retrocopy



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