RetrogeneDB ID: retro_mmur_227

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1880:92022..93302(+)
• Located in intron of: ENSMICG00000011230

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENTPD5
• Ensembl ID: ENSMICG00000003012
• Aliases: None
• Description: ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:3367]

Sequence

>retro_mmur_227
ATGGCTACTTCCTGGAGTGCAATCTTTTTCATGCTGGTGGTATCCTGTGTTTGCAGCACTGTCTTCCACAGGTACCAGCA
GACTTGGTTTGAGGGTGTCTTCCTGTCTTCCATGTGCCCCATCAATGTCAGTGCCAGCACCTTGTATGGAATTATGTGTG
ATGCAGTGAGCACTGGAACTCGAATTCATGTTTACACCTTTGTGCAGAAAACACTAGGACAGTTTCCAATTCTAGAAGGG
GAAATTTTTGATTCTGTGAAGCCAGGACTTTCTGCTTTTGTAGATCAACCTAAGCAGGGTGCTGAGACTGTTCAAGGACT
CTTAGAGGTGGCCAAAGACTCAATCCCCCCAAGTCACTGGAAGACGACCCCAGTGGTCCTCAAGGCAACAGCAGGACTGT
CTTATTGCCAGAACGGAAAGCCCAGGCTCTACTCTTTGAGGTAAAGGAGATCTTCAGGAAGTCACCTTTCCTGGTACCAA
AGGACAGTGTCAGCATCATGGACAGATCCTATGAAGGCATATTAGCTTGGGTTACTGTGAATTTTCTGACAGGTCAGCTG
CATGGCCACAGCCAAGAGACCGTGGGGACCCTGGACCTGGGGGGGCCTCCACCCAAATCACGTTTCTGCCCCATTTTGAG
AAAACCCTGGAACAAACACCTAGGGGCTATCTCACTTCCTTTGAGATGTTTAACAGCACTTATAAGCTCTACACACACAG
TTACTTGGGATTGGACTGGAATCCACAAGACTAGCAACTCTGGGAGCCCTGAGACATAAGGGATTGATGGACACACTTTC
CAAAGTGCTTGTCTACCGAGATGGTTGGAAGCAGAGTGGATCTTTGGAGGTGCGAAATACCAGTATGGTGGCAACCAAGA
AGGGGAGATGGGCTTTGAGCCCTGCTATGCCAAAGTCCTGAGGGTGGTACAAGGAAAACTTCACCAGCCAGAAGAGATCC
AGGGAAGCTCCTTCTATGCTTTCTCTTACTATTATGATTGAGCTGTTGACACAGACATGATTGATTATGAAAAGGGGGGT
GTTTTAAAAGTTGAAGATTTTGAAAGAAAGGCCAGAGAAGTGTGTGATAACTTGGAAAACTTCACCTCTGGCAGTCCTTT
TCTGTGCATGGACCTAGCCTATATCATAGCCCTGTTAAAGGATGGCTCTGGCTTTGCAAACAGCACCATCTTACAGCTCA
CAAAGAAAGTGAACAACATAGAAACAGGCTGGGCCTTGGGGGCCACCTTTCACCTGTTGCAGTCTCTGGGCATTTCCCAC

Alignment

ORF - retro_mmur_227 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.29 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MATSWSAIFFMLVVSCVCSTVFHRDQQTWFEGVFLSSMCPINVSASTLYGIMFDAGSTGTRIHVYTFVQK
          MATSWSAIFFMLVVSCVCSTVFHR.QQTWFEGVFLSSMCPINVSASTLYGIM.DA.STGTRIHVYTFVQK
Retrocopy MATSWSAIFFMLVVSCVCSTVFHRYQQTWFEGVFLSSMCPINVSASTLYGIMCDAVSTGTRIHVYTFVQK

Parental  TPGQLPILEGEIFDSVKPGLSAFVDQPKKGAETVQGLLEVAKDSIPRSHWKTTPVVLKATAGLR-LLPER
          T.GQ.PILEGEIFDSVKPGLSAFVDQPK.GAETVQGLLEVAKDSIP.SHWKTTPVVLKATAGL..LLPER
Retrocopy TLGQFPILEGEIFDSVKPGLSAFVDQPKQGAETVQGLLEVAKDSIPPSHWKTTPVVLKATAGLS<LLPER

Parental  KAQALLFEVKEIFRKSPFLVPKDSVSIMDGSYEGILAWVTVNFLTGQLHGHSQETVGTLDLGG-ASTQIT
          KAQALLFEVKEIFRKSPFLVPKDSVSIMD.SYEGILAWVTVNFLTGQLHGHSQETVGTLDLGG.ASTQIT
Retrocopy KAQALLFEVKEIFRKSPFLVPKDSVSIMDRSYEGILAWVTVNFLTGQLHGHSQETVGTLDLGG<ASTQIT

Parental  FLPQFKKTLEQTPRGYLTSFEMFNSTYKLYTHSYLGF-GLKAARLATLGAL-ETQGIDGHTFRSACLPRW
          FLP.F.KTLEQTPRGYLTSFEMFNSTYKLYTHSYLG..GL...RLATLGAL.ET.GIDGHTF.SACLPRW
Retrocopy FLPHFEKTLEQTPRGYLTSFEMFNSTYKLYTHSYLGL<GLESTRLATLGAL<ET*GIDGHTFQSACLPRW

Parental  LEAEWIFGGVKYQYGGNQEGNMGFEPCYAEVLRVVQGKLHQPEEIQRSSFYAFSYYYDRAVDTDMIDYEK
          LEAEWIFGG.KYQYGGNQEG.MGFEPCYA.VLRVVQGKLHQPEEIQ.SSFYAFSYYYD.AVDTDMIDYEK
Retrocopy LEAEWIFGGAKYQYGGNQEGEMGFEPCYAKVLRVVQGKLHQPEEIQGSSFYAFSYYYD*AVDTDMIDYEK

Parental  GGVLKVEDFERKAREVCDNLENFTSGSPFLCMDLAYITALLKDGFGFADSTILQLTKKVNNIETGWALGA
          GGVLKVEDFERKAREVCDNLENFTSGSPFLCMDLAYI.ALLKDG.GFA.STILQLTKKVNNIETGWALGA
Retrocopy GGVLKVEDFERKAREVCDNLENFTSGSPFLCMDLAYIIALLKDGSGFANSTILQLTKKVNNIETGWALGA

Parental  TFHLLQSLGISH
          TFHLLQSLGISH
Retrocopy TFHLLQSLGISH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_227 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_227 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000003012	1 retrocopy	retro_mmur_227 ,
Oryctolagus cuniculus	ENSOCUG00000006803	1 retrocopy	retro_ocun_1702,