RetrogeneDB ID: retro_mmur_567

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3887:242482..243249(+)
• Located in intron of: ENSMICG00000009929

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AURKB
• Ensembl ID: ENSMICG00000013775
• Aliases: None
• Description: aurora kinase B [Source:HGNC Symbol;Acc:11390]

Sequence

>retro_mmur_567
CCCCTGGGCAAGAGAAAATTTGGGAATGTGTACCTGGCTCGGGTCAAGGAAAGTCATTTTATTGTGGCCTTCCAGGTTAT
TTTCAAGTCCCAGATAGAGAAGGAAGGACTGGAGCACCAGCTGCGCAGGGAAATTGAAATCTAGGCGCATCTACAACACC
CCAGTATCCTAAGGCTGTACAATTACTTCCATAATGCTCACCGGGTATACTTGATCCTGGAATATGCTCCCAGGGGTGAG
CTCTACAAAGAGCTGCAGAAAAAACAGAAATTAGATAAGCAGCCAACAGCCATGGTAACAGAGGAGCTGGCAGATGCCTT
GACTTACTGCCACGACAAGAAAGTGATTCAAAGGGATGTTAAGCCAGAAAACCTGTTTCTAGGATTCATGAGTGAGGTGA
AGATTGCAGATTTTGGCTGGTCTGTGCACACTCCCTCTCTGAGGAGAAAGACAATGTGTGGAACACCAGACTACTTGCCC
TCAGAAATGATGGAGGGGAGAACATATGATGAGAAGGTGGATCTGTGGTATATTAGGGTGCTCTGCTATGAGCTGCAGGT
AAATCCACCCTTTGAGAGTGCCTCAAATGAGACCTACAGACACATTCTCAAGGTTGATGTGAGGTTCTCCCATCAATGCC
TTTGGGGGCCTAGAACTTGATCTCCAAGCTTCTCAGATACAATCCCCAGGAGCGGCAGCCCCTGGCCCAGATCCTGGAGC
ACCCTTGGGTCCAGGCCCATTCCTGGAGGGTGCTGCCTTCCTGTGCT

Alignment

ORF - retro_mmur_567 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.68 %
• Parental protein coverage: 78.66 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLQHPNILRLYNYFYDRKRIY
          PLGK.KFGNVYLAR.K.SHFIVA..V.FKSQIEKEG.EHQLRREIEI.AHLQHP.ILRLYNYF....R.Y
Retrocopy PLGKRKFGNVYLARVKESHFIVAFQVIFKSQIEKEGLEHQLRREIEI*AHLQHPSILRLYNYFHNAHRVY

Parental  LILEYAPRGELYKELQKSRTFDEQRTATIMEELADALMYCHGKKVIHRDIKPENLLLGLKGELKIADFGW
          LILEYAPRGELYKELQK....D.Q.TA...EELADAL.YCH.KKVI.RD.KPENL.LG...E.KIADFGW
Retrocopy LILEYAPRGELYKELQKKQKLDKQPTAMVTEELADALTYCHDKKVIQRDVKPENLFLGFMSEVKIADFGW

Parental  SVHAPSLRRKTMCGTLDYLPPEMIEGRTHNEKVDLWCIGVLCYELLVGNPPFESASHNETYRRIVKVDLK
          SVH.PSLRRKTMCGT.DYLP.EM.EGRT..EKVDLW.I.VLCYEL.V.NPPFESAS.NETYR.I.KVD..
Retrocopy SVHTPSLRRKTMCGTPDYLPSEMMEGRTYDEKVDLWYIRVLCYELQV-NPPFESAS-NETYRHILKVDVR

Parental  FP-PSVPEGARDLISKLLRHNPSERLPLAQVSAHPWVRAHSRRVLPPSA
          F..PS.P.GA..LISKLLR.NP.ER.PLAQ...HPWV.AHS.RVLP..A
Retrocopy FS<PSMPLGA*NLISKLLRYNPQERQPLAQILEHPWVQAHSWRVLPSCA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_567 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_567 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013775	1 retrocopy	retro_mmur_567 ,
Myotis lucifugus	ENSMLUG00000003633	2 retrocopies	retro_mluc_764, retro_mluc_798,
Macaca mulatta	ENSMMUG00000002997	1 retrocopy	retro_mmul_2367,
Pteropus vampyrus	ENSPVAG00000016378	1 retrocopy	retro_pvam_1045,
Tursiops truncatus	ENSTTRG00000010318	1 retrocopy	retro_ttru_542,