RetrogeneDB ID: retro_mluc_798

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429776:4798211..4798755(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AURKB
• Ensembl ID: ENSMLUG00000003633
• Aliases: None
• Description: None

Sequence

>retro_mluc_798
CTCTACAAGGAGCTGCAAAAGAGCCACAGGATCGATGAGCAGCGTACGGCCAGGATCATGGAGGAGCTGGCGCACGCTCT
GGCCTACTGCCATGAGAACAAGGTGATCCACAGGGACATTAAGCCGGAGAACCTGCTGCTGGGGCTCCGGGGGGAGGTGA
AGATTGCGGACTTTGGCTGGTCCGTGCACACCCCCTCGCTGAGGAGGAAGACCATGTGCGGGACTCTGGATTACTTGCCC
CCGGAAATGGTCGAGCAGAGGACGTACAGCGAGATGGTGGACCTGTGGTGCATCGGGGTGCTCTGCTAAGAGGCTGCTGG
TGGGAAATCCCCCCTTCGAGAGCTCCTCCTACTCCGACACCTACAGGCGCATCCTCAAGGTTGATGTAAAGTTTCCTCCA
TCAATACCTTTGGGGGCCCAGGACTTGATCAGCAAGCTTCTCAGATAACAGCCCTCAGAGAGGCTGCCGCTGGCCCAGGT
CCTGCAGCATCCTTGGGTGCAGGCCCATTCTCGGAGGGTGGGGCCTCCACCCGCTCCGTCGTCC

Alignment

ORF - retro_mluc_798 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.12 %
• Parental protein coverage: 53.39 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LYKELQKSRTFDQQRTATIMEELADALMYCHKKKVIHRDIKPENLLLGLQGELKIADFGWSVHAPSLRRK
          LYKELQKS...D.QRTA.IMEELA.AL.YCH..KVIHRDIKPENLLLGL.GE.KIADFGWSVH.PSLRRK
Retrocopy LYKELQKSHRIDEQRTARIMEELAHALAYCHENKVIHRDIKPENLLLGLRGEVKIADFGWSVHTPSLRRK

Parental  TMCGTLDYLPPEMIEGRTHNEKVDLWCIGVLCYE-LLVGNPPFESASHNETYRRIVKVDLKFPPSVPVGA
          TMCGTLDYLPPEM.E.RT..E.VDLWCIGVLC.E.LLVGNPPFES.S...TYRRI.KVD.KFPPS.P.GA
Retrocopy TMCGTLDYLPPEMVEQRTYSEMVDLWCIGVLC*E>LLVGNPPFESSSYSDTYRRILKVDVKFPPSIPLGA

Parental  QDLISKLLKHNPSDRLPLAQVSAHPWVRAHSRRVLPPSALQS
          QDLISKLL...PS.RLPLAQV..HPWV.AHSRRV.PP.A..S
Retrocopy QDLISKLLR*QPSERLPLAQVLQHPWVQAHSRRVGPPPAPSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_798 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013775	1 retrocopy	retro_mmur_567,
Myotis lucifugus	ENSMLUG00000003633	2 retrocopies	retro_mluc_764, retro_mluc_798 ,
Myotis lucifugus	ENSMLUG00000007925	1 retrocopy	retro_mluc_1931,
Macaca mulatta	ENSMMUG00000002997	1 retrocopy	retro_mmul_2367,
Pteropus vampyrus	ENSPVAG00000016378	1 retrocopy	retro_pvam_1045,
Tursiops truncatus	ENSTTRG00000010318	1 retrocopy	retro_ttru_542,