RetrogeneDB ID: retro_mmur_610

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4165:514589..515310(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM219
• Ensembl ID: ENSMICG00000009088
• Aliases: None
• Description: transmembrane protein 219 [Source:HGNC Symbol;Acc:25201]

Sequence

>retro_mmur_610
ATGGGTGACTGCCAGGTGGGGCACAATCTGCATCTGTGTCTGGCCCACCACCCACCTCTGATCTGTGCCACCTTGATCCT
GCTGCTGCTTGGCCTCTCCGGCCTGGGCCTTGGCAGCTTCCTCCACACCCACAGGACTGGCCTGTGCAGCCCTGACATCC
CTCAGGACTGGGTCTCTTTCTTGAGATTTTTTTGGCCAGCTGACCCTGTGCCCTGTGAATGGGATAGTCACAGGAAAGTG
GCAAGGGTCTCACGTCGTGGGCTTACTGACCACCTTGAACTTCGCAGAAGGTCCAGACAGGAACAAGACACAGACATTCC
AAACCAAGATCCTGGGTGGTCAGATGGGATTGAAAGGATCTTCTGCAGGACAGCAGGTCCTCATCACAGCCAGGGTGACC
AGTGAAAAGACCCCAGGAATCTGCTGTATTTTAGTGCTGTTCCAGGAATTCTGCCCTCTAGCCAGCCACCCATATCCTGT
TCAGAGGAAGGAGCAGGAAATGCCACCCTAAGCCCTAAGATGGGTGAGGATTATGTCAGGGTCTGGAGCCACAAAGGCCT
CGTGCTCACCAAGCTGCTCACCTCGGAGGAACTGGCTCTGTGTGGGTCCAGGCTACTGGTCTTGGGCTAACTTCCTGCTT
CTCTTCTGTGGCCTTCTCTGCTGTGTCACTGCTTTGTGCTTCCACCCATGTCGGGAGTCCCACTGGTCTAGAACCCAGCT
C

Alignment

ORF - retro_mmur_610 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.18 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MGDCQAGHNLHLCLAHHPPLVCATLILLLLGLSGLGLGSFLRTHRTGLRSPDIPQDWVSFLRSF-GQLTL
          MGDCQ.GHNLHLCLAHHPPL.CATLILLLLGLSGLGLGSFL.THRTGL.SPDIPQDWVSFLR.F.GQLTL
Retrocopy MGDCQVGHNLHLCLAHHPPLICATLILLLLGLSGLGLGSFLHTHRTGLCSPDIPQDWVSFLRFF>GQLTL

Parental  CPVNGTVTGKWQGSHVVGLLTTLNFAEGPDRNKTQTFQTKILGSQMGLKGSSAGQQVLITARVTTEKTPG
          CPVNG.VTGKWQGSHVVGLLTTLNFAEGPDRNKTQTFQTKILG.QMGLKGSSAGQQVLITARVT.EKTPG
Retrocopy CPVNGIVTGKWQGSHVVGLLTTLNFAEGPDRNKTQTFQTKILGGQMGLKGSSAGQQVLITARVTSEKTPG

Parental  IC-LYFSAVPGILPSSQPPISCSEEGAGNVTLSPRMGEECVRVWSHEGLVLTKLLTSEELALCGSRLLVL
          IC.LYFSAVPGILPSSQPPISCSEEGAGN.TLSP.MGE..VRVWSH.GLVLTKLLTSEELALCGSRLLVL
Retrocopy IC<LYFSAVPGILPSSQPPISCSEEGAGNATLSPKMGEDYVRVWSHKGLVLTKLLTSEELALCGSRLLVL

Parental  G-SFLLLFCGLLCCVTALCFHPRRESHWSRTRL
          G..FLLLFCGLLCCVTALCFHP.RESHWSRT.L
Retrocopy G>NFLLLFCGLLCCVTALCFHPCRESHWSRTQL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_610 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_610 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021785	1 retrocopy	retro_btau_1792,
Microcebus murinus	ENSMICG00000009088	1 retrocopy	retro_mmur_610 ,
Macaca mulatta	ENSMMUG00000020273	1 retrocopy	retro_mmul_2266,
Oryctolagus cuniculus	ENSOCUG00000006318	1 retrocopy	retro_ocun_517,