RetrogeneDB ID: retro_mmur_898

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_123480:1..654(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM49A
• Ensembl ID: ENSMICG00000013924
• Aliases: None
• Description: family with sequence similarity 49, member A [Source:HGNC Symbol;Acc:25373]

Sequence

>retro_mmur_898
TACAGAGGAGCTGGCCGTGAAATACGAGAGGCAATCCAGCATCCAGCAGATGAGAAGTTGCAAGAGAAAGCATGGGGTGC
AGTTGTTCCACTAGTAGGCAAATTAAAGAAATTTTTTTCGAATTTTCTCAGAGGTTAGAAGCAGCGTTAAGAGGTCTTCC
GGGAGCTTTGACGAGTACCGCGTTTTCTCCTACCCAGCATCTAGAGCGAGAGCAGGCTCTTGCTAAACAGTTTGCAGAAA
TTCATTTCACGCTCCGGTTTGATGAACTCAAGATGACAAATCCTGCCATACAGAATGATTTCAGCTATTATAGAAGAACA
ATGAGTTGTGTGAGGATTAATAATGTACCAGCAGAAGGAGAAAATGAAGTAAATAATGAATTGGCAAATCGAATGCCTTT
GTTTTATGCTGAGCCAACTCCAATGCTGAAAACCTTGAGTGATGCTACAACAAAATTCGTATCAGAGAATAAAAATTTAC
CAATAGAAAATACTACAGATTTCTTAAGCACCATGGCTAGTGTGTGCAGAGTTATGCTTGAAACACCAGAATACAGAAGC
AGATTTCCAAATGAAGAGAGAGTGTCATTCTGCTTGGAGGATATGGTGGGCATCATAATACTCTATGACCTCGTACATCC
AGTGGGAGCATTT

Alignment

ORF - retro_mmur_898 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.27 %
• Parental protein coverage: 72.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YKGAGPEIRDAIQNPNDIQLQEKAWNAV-CPLVVRLKR-FYEFSIRLEKALQSLLESLTCPPYTPTQHLE
          Y.GAG.EIR.AIQ.P.D..LQEKAW.AV.C......K..F.EFS.RLE.AL..L...LT.....PTQHLE
Retrocopy YRGAGREIREAIQHPADEKLQEKAWGAV<CSTSRQIKEIFFEFSQRLEAALRGLPGALTSTAFSPTQHLE

Parental  REQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAE
          REQALAK.FAEI.HFTLRFDELKM.NPAIQNDFSYYRRT.S..RINN.....ENEVNNE.ANRM.LFYAE
Retrocopy REQALAKQFAEI-HFTLRFDELKMTNPAIQNDFSYYRRTMSCVRINNVPAEGENEVNNELANRMPLFYAE

Parental  ATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIIL
          .TPMLKTLS.AT..FVSENK.LPIENTTD.LSTM.SVC.VMLETPEYRSRF..EE...FC...MVG.IIL
Retrocopy PTPMLKTLSDATTKFVSENKNLPIENTTDFLSTMASVCRVMLETPEYRSRFPNEERVSFCLEDMVGIIIL

Parental  YDHVHPVGAF
          YD.VHPVGAF
Retrocopy YDLVHPVGAF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_898 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_898 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000012839	1 retrocopy	retro_cpor_68,
Microcebus murinus	ENSMICG00000013924	1 retrocopy	retro_mmur_898 ,
Tarsius syrichta	ENSTSYG00000010693	4 retrocopies	retro_tsyr_1129, retro_tsyr_1823, retro_tsyr_2111, retro_tsyr_827,