RetrogeneDB ID: | retro_mmus_1420 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:91128727..91129498(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hormad1 | ||
Ensembl ID: | ENSMUSG00000028109 | ||
Aliases: | Hormad1, 4921522K05Rik, Nohma | ||
Description: | HORMA domain containing 1 [Source:MGI Symbol;Acc:MGI:1915231] |
Percent Identity: | 81.85 % |
Parental protein coverage: | 65.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | QNNKSSTTSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFD |
QNNKS.TTSAD.KKASI.LIRKI.VLMQNLGPLPN.VCLT.KLFYYDEVTPPDYQPPGFKDGD.EGVIFD | |
Retrocopy | QNNKSCTTSADSKKASIPLIRKI*VLMQNLGPLPNAVCLTRKLFYYDEVTPPDYQPPGFKDGDYEGVIFD |
Parental | GDPTYLNVGEVPTPFHTFRLKVTTEKERMENIDSTILKPKESKTQFEKILMDKDDVEDENHNNFDIKTKM |
GDPTYLNVGEVPTPF...RLKVTTEKERMENIDSTILKPK.SKTQF.K.L.DKDDVEDENHNNFDIKTKM | |
Retrocopy | GDPTYLNVGEVPTPFYNSRLKVTTEKERMENIDSTILKPKGSKTQF*KLLRDKDDVEDENHNNFDIKTKM |
Parental | NEQNENSGASEIK-EPNLDCKEEETMQFKKSQSPSISHCQVEQLVSKTSELDVSESKTRSGKIFQSKMVN |
N..NENSGAS.IK.E..LDCK.EET...K...S...S........S.TSELDVSESKTRS.K..QSK.VN | |
Retrocopy | NAENENSGASGIK<EADLDCKKEETAIQKEPLSFNFSLSG*AVRASTTSELDVSESKTRSRKFSQSKIVN |
Parental | GNNQQGQTSKENRKRSLRQFRKT-VLHVLESSQESVLKKRRVSEPKEHT |
G.NQQGQTS.ENRKRSLRQF.KT.VLHVLESSQESVLKKRRVSEPKEHT | |
Retrocopy | GDNQQGQTSEENRKRSLRQFGKT>VLHVLESSQESVLKKRRVSEPKEHT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .02 RPM |
SRP007412_liver | 0 .00 RPM | 0 .03 RPM |
SRP007412_testis | 0 .05 RPM | 30 .65 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000071 | 1 retrocopy | |
Homo sapiens | ENSG00000143452 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028109 | 2 retrocopies |
retro_mmus_1420 , retro_mmus_2717,
|
Otolemur garnettii | ENSOGAG00000005640 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021160 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006025 | 1 retrocopy |