>retro_rnor_1772
AAGTGGATGCTAGGATGCTATGATGCTTTACAGAAGAAATATCTAAGGATAATCATTCTAGCCGTATATACCAATCCAGA
AGATCCTCAGACAATTTCAGAATGTTACCAGTTTAAATTCAAGTACACCTAAAATGGACCAATCATGGACTCTATAAGCA
AAAAATCAAAACAATAACTCTAGTACAACATCTGCTTACACCAAGAAAGCAAGTATTCTCCTCATTCGGAAGATTTATGT
CCTAATGCAAAATCTAGGATCATTACCTAATGATGTTTGTCTGACAATGAAACTTTTTTACTACGATGAAGGTACACCCC
AAGATTACCAGCCACCAGGTTTTAAGGATGGTGATTGTGAAGGAGCAATATTTGATAGGGACCCTACATACTTAAATGTG
GGAGAAGTCCCAACACCTTCTCAACACCTTCAGATTAAAAGTGACCACTGAGAAGGAATGAATGGAAAATATTGATTCAG
CCATACTAACACCAAAAGATTAAAAAATGCCATTTCGAAAAATTCTAATGGACAAAGATGATGTAGAAAATGAAAATCAT
AGTAATTTTGACATTAAAACTAAAATGAACGAGCAGAATGAAAACTCTGGAACTTCTGAAATCAAAGAACCAAATTTAGA
TTGTAAGGAAGAAGAAATTATGCAATTCAAAAAGAACCAAAATCCTTCAATTTCTCAGTGTCAGCTTGAACAGTTAATCA
GTAAAACATCTGAACTTGATGTGTTTGAAAGCAAAACAAGAAGCGGAAAAATCTTTCAGTGCAAAATGGTAAATGGAAAT
CAACAAGGACGAGCTTCTAGAAAAAATCGGAAGAGAAGTCTTCGTCAATCTGGGAAAACAGTCCTTCATATCTTGGAATC
TTCTAGTCAAGAGTCGGTGCTGAAGAGAAGGAGAGTTAGTGAACCAAAGGAACATACC
ORF - retro_rnor_1772 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.76 % |
Parental protein coverage: |
79.59 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | KWMLGCYDALQKKYLRMIILAVYTNPEDPQTISECYQFKFKYTKNGPIMDFISK-NQNNKSSTTSADTKK |
| KWMLGCYDALQKKYLR.IILAVYTNPEDPQTISECYQFKFKYT.NGPIMD.ISK.NQNN.SSTTSA.TKK |
Retrocopy | KWMLGCYDALQKKYLRIIILAVYTNPEDPQTISECYQFKFKYT*NGPIMDSISK>NQNNNSSTTSAYTKK |
|
Parental | ASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFDGDPTYLNVGEVPTP |
| ASILLIRKIYVLMQNLG.LPNDVCLTMKLFYYDE.TP.DYQPPGFKDGDCEG.IFD.DPTYLNVGEVPTP |
Retrocopy | ASILLIRKIYVLMQNLGSLPNDVCLTMKLFYYDEGTPQDYQPPGFKDGDCEGAIFDRDPTYLNVGEVPTP |
|
Parental | -FHTFRLKVTTEKERMENIDSAILTPKDSKIPFQKILMDKDDVEDENHNNFDIKTKMNEQNENSGTSEIK |
| ...TFRLKVTTEKE.MENIDSAILTPKD.K.PF.KILMDKDDVE.ENH.NFDIKTKMNEQNENSGTSEIK |
Retrocopy | >LNTFRLKVTTEKE*MENIDSAILTPKD*KMPFRKILMDKDDVENENHSNFDIKTKMNEQNENSGTSEIK |
|
Parental | EPNLDCKEEEIMQFKKNQSSSISQCQVEQLISKTSELDVSESKTRSGKIFQCKMVNGNQQGQISKENRKR |
| EPNLDCKEEEIMQFKKNQ..SISQCQ.EQLISKTSELDV.ESKTRSGKIFQCKMVNGNQQG..S..NRKR |
Retrocopy | EPNLDCKEEEIMQFKKNQNPSISQCQLEQLISKTSELDVFESKTRSGKIFQCKMVNGNQQGRASRKNRKR |
|
Parental | SLRQSGKTVLHILESSSQESVLKRRRVSEPNEHT |
| SLRQSGKTVLHILESSSQESVLKRRRVSEP.EHT |
Retrocopy | SLRQSGKTVLHILESSSQESVLKRRRVSEPKEHT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .22 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .21 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_1772 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_1772 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_1772 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
7 retrocopies.