RetrogeneDB ID: | retro_mmus_1624 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:21964131..21964423(-) | ||
Located in intron of: | ENSMUSG00000053347 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000086004 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl20 | ||
Ensembl ID: | ENSMUSG00000029066 | ||
Aliases: | Mrpl20, 2610008D01Rik, 4930425I20Rik | ||
Description: | mitochondrial ribosomal protein L20 [Source:MGI Symbol;Acc:MGI:2137221] |
Percent Identity: | 87.76 % |
Parental protein coverage: | 65.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | CTKARRLKKRN-LRTLWINRITAASQEHGLKYPAFIVNLIKCQVELNRKVLVDLAIYEPKTFKSLAALAK |
CTK..RLKK.N.LRTLWIN.ITAASQEHGL.YP.F.VNL.KCQVELNRKV.VDLAIYEP.T.KSLAALAK | |
Retrocopy | CTKSHRLKKQN>LRTLWINPITAASQEHGLQYPEFTVNLMKCQVELNRKVPVDLAIYEP*TLKSLAALAK |
Parental | RRQQEGFAAALGDGKEPEGIFSRVVQYH |
RRQQEGFAAALGDGKEPEGIFSRVVQYH | |
Retrocopy | RRQQEGFAAALGDGKEPEGIFSRVVQYH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 23 .39 RPM |
SRP007412_cerebellum | 0 .13 RPM | 15 .20 RPM |
SRP007412_heart | 0 .00 RPM | 14 .32 RPM |
SRP007412_kidney | 0 .06 RPM | 19 .23 RPM |
SRP007412_liver | 0 .05 RPM | 16 .28 RPM |
SRP007412_testis | 0 .14 RPM | 26 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013932 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000019259 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010105 | 1 retrocopy | |
Homo sapiens | ENSG00000242485 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027251 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011857 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006562 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029066 | 1 retrocopy |
retro_mmus_1624 ,
|
Otolemur garnettii | ENSOGAG00000005968 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001425 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008735 | 2 retrocopies |