RetrogeneDB ID: | retro_mmus_175 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:101306560..101307079(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000072381 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rangrf | ||
Ensembl ID: | ENSMUSG00000032892 | ||
Aliases: | Rangrf, 2400006H24Rik, Mog1, Rangnrf | ||
Description: | RAN guanine nucleotide release factor [Source:MGI Symbol;Acc:MGI:1889073] |
Percent Identity: | 99.25 % |
Parental protein coverage: | 71.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEPNRNCPLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYHFED |
MEPNRNCPLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYHFED | |
Retrocopy | MEPNRNCPLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYHFED |
Parental | VGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVAKENQQVAKDVTLHQALLRLPQ |
VGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVAKENQQVAKDVTLHQALLRLP. | |
Retrocopy | VGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVAKENQQVAKDVTLHQALLRLPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .22 RPM |
SRP007412_heart | 0 .03 RPM | 0 .09 RPM |
SRP007412_kidney | 0 .02 RPM | 0 .10 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .05 RPM | 0 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012555 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018164 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007147 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000006399 | 2 retrocopies | |
Mus musculus | ENSMUSG00000032892 | 2 retrocopies |
retro_mmus_175 , retro_mmus_2983,
|
Rattus norvegicus | ENSRNOG00000004980 | 4 retrocopies |