RetrogeneDB ID: | retro_rnor_1148 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:40988560..40988926(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rangrf | ||
Ensembl ID: | ENSRNOG00000004980 | ||
Aliases: | Rangrf, RGD1563195 | ||
Description: | ran guanine nucleotide release factor [Source:RefSeq peptide;Acc:NP_001099260] |
Percent Identity: | 90.16 % |
Parental protein coverage: | 65.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEPARNCPLFGGAFSAILPRGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYHFED |
MEP.RNCPLF.GAFS.ILPRGAIDVSDLR.VPDNQE.FCHPVTDQSLIIELLEL.AHVQG.AAARYHFE. | |
Retrocopy | MEPTRNCPLFRGAFSTILPRGAIDVSDLRLVPDNQEAFCHPVTDQSLIIELLELGAHVQGTAAARYHFEG |
Parental | VGGVQGARSVHVLSVQPLCLENLSLRGCCQDAWFLSGKQQVAKENQQVAKDV |
.GGVQGAR.V.VLSVQPLCLENLSLRGCCQDAWFLSGKQQVAKENQQVAK.V | |
Retrocopy | TGGVQGARAVRVLSVQPLCLENLSLRGCCQDAWFLSGKQQVAKENQQVAKGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .49 RPM |
SRP017611_liver | 0 .00 RPM | 3 .90 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012555 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018164 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007147 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000006399 | 2 retrocopies | |
Mus musculus | ENSMUSG00000032892 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004980 | 4 retrocopies |