RetrogeneDB ID: | retro_mmus_1805 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:6152714..6153197(+) | ||
Located in intron of: | ENSMUSG00000039699 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083458 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lamtor1 | ||
Ensembl ID: | ENSMUSG00000030842 | ||
Aliases: | Lamtor1, 2400001E08Rik, Pdro, p18 | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:MGI Symbol;Acc:MGI:1913758] |
Percent Identity: | 96.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGCCYSSENEDSDQDREERKLLLDPSSTPTKALNGAEPNYHSLPSARTDEQALLSSILAKTASNIIDVSA |
MGCCYSSENED.DQDREERKLLLDPSSTPTKALNGAEPNYHSLPSARTDEQALLSSIL.KTASNIIDVSA | |
Retrocopy | MGCCYSSENEDLDQDREERKLLLDPSSTPTKALNGAEPNYHSLPSARTDEQALLSSILVKTASNIIDVSA |
Parental | ADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPIPFSDLQQVSRIAAYAY |
.DSQGMEQHEYMDRARQYS.RLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPIPFSDLQQVSRIAAYAY | |
Retrocopy | VDSQGMEQHEYMDRARQYSARLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPIPFSDLQQVSRIAAYAY |
Parental | SALSQIRVDAKEELVVQFGIP |
SALSQIRVD.KEELVVQFGIP | |
Retrocopy | SALSQIRVDVKEELVVQFGIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 36 .33 RPM |
SRP007412_cerebellum | 0 .09 RPM | 31 .26 RPM |
SRP007412_heart | 0 .09 RPM | 60 .11 RPM |
SRP007412_kidney | 0 .02 RPM | 48 .80 RPM |
SRP007412_liver | 0 .00 RPM | 30 .34 RPM |
SRP007412_testis | 0 .09 RPM | 19 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010854 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000003560 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030842 | 2 retrocopies |
retro_mmus_1805 , retro_mmus_2538,
|
Rattus norvegicus | ENSRNOG00000020016 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014730 | 2 retrocopies |