RetrogeneDB ID: | retro_mmus_2291 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
| Coordinates: | 3:113053891..113054275(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000045952 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | Leprot | ||
| Ensembl ID: | ENSMUSG00000035212 | ||
| Aliases: | Leprot, LEPR, OB-RGRP, Obrgrp, VPS55 | ||
| Description: | leptin receptor overlapping transcript [Source:MGI Symbol;Acc:MGI:2687005] |
Retrocopy-Parental alignment summary:
>retro_mmus_2291
GTTAAAGCACTCATGGCGCTCTCCTTCAGTGGGGCAATTGGGCTGACTTTTCTTATGCTGGGATGTGCCTTGGAGGACTA
TGACATTTACTGGCCCCTGTTCGTCTTGATTTTCTACGTCATCTCCCCCATCCCCTACTTCATTGCCAAAAGGGTCACAT
ATGACTCTGACGCGACCAGCAGTGCCTGTCCGGAATTGGTGTATTTCTTCACCACTGGGATTGTTGATTCTGCCTTTGGA
CTTCCTGTTATTCTTGCTCGTGTGGATGTGATCAAGTGGGGAGCCTGTGGTCTTGTGTTGGCCAGCAACGCTGTCATTTT
CCTCACAATTCTAGGCTTCTTCCTCGTCTTTGAAGGAAGAGATGATTTCAGTTGGGAACAGTGG
GTTAAAGCACTCATGGCGCTCTCCTTCAGTGGGGCAATTGGGCTGACTTTTCTTATGCTGGGATGTGCCTTGGAGGACTA
TGACATTTACTGGCCCCTGTTCGTCTTGATTTTCTACGTCATCTCCCCCATCCCCTACTTCATTGCCAAAAGGGTCACAT
ATGACTCTGACGCGACCAGCAGTGCCTGTCCGGAATTGGTGTATTTCTTCACCACTGGGATTGTTGATTCTGCCTTTGGA
CTTCCTGTTATTCTTGCTCGTGTGGATGTGATCAAGTGGGGAGCCTGTGGTCTTGTGTTGGCCAGCAACGCTGTCATTTT
CCTCACAATTCTAGGCTTCTTCCTCGTCTTTGAAGGAAGAGATGATTTCAGTTGGGAACAGTGG
ORF - retro_mmus_2291 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 90.62 % |
| Parental protein coverage: | 97.71 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFYVISPIPYFIAKRVTYDSDATSSACRELAYFF |
| VKAL.ALSFSGAIGLTFLMLGCALEDY..YWPLFVLIFYVISPIPYFIAKRVTYDSDATSSAC.EL.YFF | |
| Retrocopy | VKALMALSFSGAIGLTFLMLGCALEDYDIYWPLFVLIFYVISPIPYFIAKRVTYDSDATSSACPELVYFF |
| Parental | TTGIVVSAFGLPVVLARVDVIKWGACGLVLAGNAVIFLTIQGFFLVFGRGDDFSWEQW |
| TTGIV.SAFGLPV.LARVDVIKWGACGLVLA.NAVIFLTI.GFFLVF...DDFSWEQW | |
| Retrocopy | TTGIVDSAFGLPVILARVDVIKWGACGLVLASNAVIFLTILGFFLVFEGRDDFSWEQW |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 19 .04 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 13 .11 RPM |
| SRP007412_heart | 0 .00 RPM | 31 .41 RPM |
| SRP007412_kidney | 0 .02 RPM | 46 .39 RPM |
| SRP007412_liver | 0 .00 RPM | 20 .15 RPM |
| SRP007412_testis | 0 .05 RPM | 12 .81 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_2291 was not detected
No EST(s) were mapped for retro_mmus_2291 retrocopy.
No TSS is located nearby retro_mmus_2291 retrocopy 5' end.
retro_mmus_2291 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_2291 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Mus musculus | ENSMUSG00000035212 | 1 retrocopy |
retro_mmus_2291 ,
|
| Tursiops truncatus | ENSTTRG00000016296 | 1 retrocopy |