RetrogeneDB ID: | retro_mmus_2535 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:147821779..147822202(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000080059 | |
Aliases: | Rps19-ps3, BE292558, Gm13143, OTTMUSG00000010662, Rps19-ps | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps19 | ||
Ensembl ID: | ENSMUSG00000040952 | ||
Aliases: | Rps19, Dsk3 | ||
Description: | ribosomal protein S19 [Source:MGI Symbol;Acc:MGI:1333780] |
Percent Identity: | 95.1 % |
Parental protein coverage: | 98.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGV |
GVTVKD..QQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDEN.FYTRAASTARHLYLRGGAGV | |
Retrocopy | GVTVKD--QQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENGFYTRAASTARHLYLRGGAGV |
Parental | GSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAN |
GS.T.IYGGRQRNGVRPSHFSRGSKSVA.RVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRI.GQVAAAN | |
Retrocopy | GSITEIYGGRQRNGVRPSHFSRGSKSVALRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRISGQVAAAN |
Parental | KKH |
KKH | |
Retrocopy | KKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .82 RPM | 27 .33 RPM |
SRP007412_cerebellum | 0 .48 RPM | 7 .38 RPM |
SRP007412_heart | 0 .37 RPM | 33 .18 RPM |
SRP007412_kidney | 0 .56 RPM | 20 .48 RPM |
SRP007412_liver | 0 .19 RPM | 25 .26 RPM |
SRP007412_testis | 0 .32 RPM | 11 .30 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000028485 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000020243 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002376 | 4 retrocopies | |
Equus caballus | ENSECAG00000009738 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013429 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000010067 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000007164 | 4 retrocopies | |
Mus musculus | ENSMUSG00000040952 | 15 retrocopies | |
Otolemur garnettii | ENSOGAG00000026255 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000048199 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000003042 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003502 | 3 retrocopies |