RetrogeneDB ID: | retro_cjac_2094 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 22:13902709..13903179(-) | ||
Located in intron of: | ENSCJAG00000004557 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS19 | ||
Ensembl ID: | ENSCJAG00000020243 | ||
Aliases: | None | ||
Description: | ribosomal protein S19 [Source:HGNC Symbol;Acc:10402] |
Percent Identity: | 87.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SLSPGWQRGGRTMPGVTVKDVNQQEF-VRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRA |
.L.PGWQ.GG.TMPGVTVKDV.QQEF..RALAAFLKKSGKLKVPEWVDT.KLAKHKELA.Y.ENWFYTRA | |
Retrocopy | ALFPGWQQGGHTMPGVTVKDVKQQEF<LRALAAFLKKSGKLKVPEWVDTAKLAKHKELATYNENWFYTRA |
Parental | ASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQG |
A.TA.HLYL.GGAGVGSMT.IYG.R.RNGVMPSHFS.GSK.VARRVLQALEGLKMVEKDQDGGRKLT.QG | |
Retrocopy | AATAWHLYLWGGAGVGSMTNIYGVR*RNGVMPSHFS*GSKRVARRVLQALEGLKMVEKDQDGGRKLTSQG |
Parental | QRDLDRIAGQVAAANKKH |
QRDLDRIAGQVAAANKKH | |
Retrocopy | QRDLDRIAGQVAAANKKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 96 .18 RPM |
SRP051959_heart | 0 .04 RPM | 54 .01 RPM |
SRP051959_kidney | 0 .02 RPM | 60 .21 RPM |
SRP051959_liver | 0 .02 RPM | 101 .61 RPM |
SRP051959_lung | 0 .13 RPM | 81 .06 RPM |
SRP051959_lymph_node | 0 .05 RPM | 147 .14 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 70 .93 RPM |
SRP051959_spleen | 0 .13 RPM | 106 .66 RPM |