>retro_mmus_3086
ATGTCAGGCTTTGATAACTTAAACAGCAGTTTCTACCAGATGAGTTACAGCATCGACGAGCAATCTCAGCAGTCCTATGA
CTATGGAGGAGGTGGAGGACCCCACGGCAAGCAGTATGCTGGCTGTGACTGCTCGCAGCAAGGCCGATTTGTCCCTCCAG
ACATGATGCAGCCACAGCAGACATACACTGGGCAGATTTACCAGCCAACTGAGGCCTATCCTCCAACAACACCTCAACCA
GCCATTCTATGGAGACAGCTTTGAGGAGGAGCCCCCTCTGTTAGAAGAGTTGGGCATCAATTTTGACATTTGGCAAAAAA
AACGCTAACGGTGCTACACCCTCTGAGGGCAGCTGACGGCAGCATCATGAATGAGACGGACTTGGCAGGGTCAGTGGTGT
TCTGCCTTGCCTTTGGGGCCACGCTGTTATTATTGGCTGGAAAATCCAGTTTGGCTACGTATATGGGATCAGTGCAATTG
GATACTTAGGAATGTTTTATTTGTTAAATTTAGTGAGTATGACAGGTGTGTCATTTGGTTGTGTGGCAAGTGTCCTGGGG
TATTATCTTCTTCCCATGATCCTGTTGTCCAACTTTGCAGTGGTATTTTCTTTACAAGGTATGGTAGGAATTCTTCTCAT
TGCCACAATTATTGGATGGTGTAGTTTTTCCGCTTCCAAAATTTTTATTTCTGCATTAGCTATGGATGGACAACAACTTT
TAGTGGCATGTCCCTGTGCTGTGTTGTATGCAGTC
ORF - retro_mmus_3086 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.24 % |
Parental protein coverage: |
97.28 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MSGFDNLNSGFYQTSYSIDEQSQQSYDYGGSGGPYSKQYAGCDYSQQGRFVPPDMMQPQQTYTGQIYQPT |
| MSGFDNLNS.FYQ.SYSIDEQSQQSYDYGG.GGP..KQYAGCD.SQQGRFVPPDMMQPQQTYTGQIYQPT |
Retrocopy | MSGFDNLNSSFYQMSYSIDEQSQQSYDYGGGGGPHGKQYAGCDCSQQGRFVPPDMMQPQQTYTGQIYQPT |
|
Parental | QAY-PPTTP-QPFYGDSFEEEPPLLEELGINFD-HIWQKTLTVLHPLRAADGSIMNETDLAGPVVFCLAF |
| .AY.P.T...QPFYGDSFEEEPPLLEELGINFD.H.....LTVLHPLRAADGSIMNETDLAG.VVFCLAF |
Retrocopy | EAYPPTTPQ>QPFYGDSFEEEPPLLEELGINFD<HLXXXXLTVLHPLRAADGSIMNETDLAGSVVFCLAF |
|
Parental | GATLLL-AGK-IQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVVFSLQG |
| GATLLL.AGK.IQFGYVYGISAIG.LGMF.LLNL.SMTGVSFGCVASVLGY.LLPMILLS.FAVVFSLQG |
Retrocopy | GATLLLLAGK<IQFGYVYGISAIGYLGMFYLLNLVSMTGVSFGCVASVLGYYLLPMILLSNFAVVFSLQG |
|
Parental | MVGILLTATIIGWCSFSASKIFISALAMDGQQLLVAYPCALLYGV |
| MVGILL.ATIIGWCSFSASKIFISALAMDGQQLLVA.PCA.LY.V |
Retrocopy | MVGILLIATIIGWCSFSASKIFISALAMDGQQLLVACPCAVLYAV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .05 RPM |
29 .25 RPM |
SRP007412_cerebellum |
0 .04 RPM |
24 .23 RPM |
SRP007412_heart |
0 .03 RPM |
9 .81 RPM |
SRP007412_kidney |
0 .04 RPM |
20 .31 RPM |
SRP007412_liver |
0 .00 RPM |
23 .21 RPM |
SRP007412_testis |
0 .05 RPM |
23 .69 RPM |
RNA Polymerase II actvity may be related with retro_mmus_3086 in 1 libraries
ENCODE library ID |
Target |
ChIP-Seq Peak coordinates |
ENCFF001XVA |
POLR2A |
7:128016666..128017026 |
No EST(s) were mapped for retro_mmus_3086 retrocopy.
No TSS is located nearby retro_mmus_3086 retrocopy 5' end.
retro_mmus_3086 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_3086 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.