RetrogeneDB ID: | retro_tsyr_16 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_405613:515..1238(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000010044 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000008071 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.34 % |
Parental protein coverage: | 90.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSGFENLNTDFFQTSYSIDDQSQQSYDYGGSGGPYSKQYTGYDYSQQGRFVPPDMMQPQQPYTGQIFQPT |
MSGFENLNTDF.QTSYSIDDQSQQSYDYGGSGGPYSKQYTGYDYSQQGRFVPPDMMQPQQPYTGQIFQPT | |
Retrocopy | MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYTGYDYSQQGRFVPPDMMQPQQPYTGQIFQPT |
Parental | QAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGAT |
QAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGP.VFCLAFGAT | |
Retrocopy | QAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPVVFCLAFGAT |
Parental | LLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQGVVGII |
LLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQG.VGII | |
Retrocopy | LLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGII |
Parental | LTAGIIGSCSFSASKIFISALAMEGQQLLVA |
LTAGIIG.CSFSASKIFISALAMEGQQLLVA | |
Retrocopy | LTAGIIGWCSFSASKIFISALAMEGQQLLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010135 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014497 | 1 retrocopy | |
Felis catus | ENSFCAG00000031350 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011143 | 3 retrocopies | |
Mus musculus | ENSMUSG00000024487 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001543 | 2 retrocopies | |
Sorex araneus | ENSSARG00000013838 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008071 | 1 retrocopy |
retro_tsyr_16 ,
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