RetrogeneDB ID: | retro_mmus_348 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:101385986..101386587(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psmb6 | ||
Ensembl ID: | ENSMUSG00000018286 | ||
Aliases: | Psmb6, Lmp19, Mpnd | ||
Description: | proteasome (prosome, macropain) subunit, beta type 6 [Source:MGI Symbol;Acc:MGI:104880] |
Percent Identity: | 92.04 % |
Parental protein coverage: | 84.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPL |
VQFNGG.VLGADSRTTTGSYIANRVTDKLTPIHD.IFCCRSGSAADTQAVADAVTYQLGFHSIELN.PPL | |
Retrocopy | VQFNGGMVLGADSRTTTGSYIANRVTDKLTPIHDYIFCCRSGSAADTQAVADAVTYQLGFHSIELNVPPL |
Parental | VHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGG-MMVRQSFAIGGSGSSYIYGYVDATYR |
VHTAASLFK.M.YRYREDLMAGIIIAGWDPQEGGQVY.VPMGG.MMVRQSFAI.GS..SYIYGYVDA.Y. | |
Retrocopy | VHTAASLFKAM*YRYREDLMAGIIIAGWDPQEGGQVYTVPMGG>MMVRQSFAI*GSMRSYIYGYVDAVYW |
Parental | EGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIPKFTIATLPPP |
EGMTKDECLQFTANALALA.E.DGSSGGVIRLAAIQESGV.RQVLLGDQIP.FTIATLPPP | |
Retrocopy | EGMTKDECLQFTANALALALECDGSSGGVIRLAAIQESGVQRQVLLGDQIPMFTIATLPPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 44 .13 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .01 RPM |
SRP007412_heart | 0 .09 RPM | 85 .73 RPM |
SRP007412_kidney | 0 .08 RPM | 73 .48 RPM |
SRP007412_liver | 0 .00 RPM | 78 .89 RPM |
SRP007412_testis | 0 .05 RPM | 103 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016075 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000015855 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012010 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012859 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010676 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014854 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000005554 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018286 | 2 retrocopies |
retro_mmus_348 , retro_mmus_3569,
|
Rattus norvegicus | ENSRNOG00000019551 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006615 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000566 | 1 retrocopy |