>retro_mmus_3697
GCTGACTACCACCTAGAAAACATAGGCTGCACCAAAATCACCAACTTCAGCACCGACATCAAGAACTCTGAAGCTTATTA
CCACCTGCTCAAGCAAGTGGTTCCAAAGGGAGATGAAGAAGGGATCCCGGATGTTGTGATTGACAAGTCAGGACTGAGGG
AGAAGGATGACATCCAGAGGGCAGAGTGCATGCTGCAACAGGCGGAGAGACTAGGCTGCCAGCAGTTTGTCAGCTACCGA
CGTTGTCTGAGGGAATCCCAAGTTGAACCTGGCCTTCATTGCCAACCTCTTTAACAAATACCTTGCCTTACACAAACCAG
AGAACCAGGACATTGACTGGGGGGCTCTCGAAGGTGAGATGAGGGAAGAACGGACATACAGGAACTGGATGAACTCCCTG
GGAGTTAACCCTTGAGTCAATCATTTTTACAGCGACTTATCAGATGCCTTAGTCATCTTCCAGCTCTATGAAAAGATCAA
AGTCCCTGTTGACTGGAACAGAGTAAACAAGCCTCCATACCCCAATACGAAAAAGCTGGAGAACTGTAATTATGCAGTAG
ATCTGGGGAAGAATCAAGCTAAATTCTCCTTGGTTGGCATCGCAGGACAAGACCTCAATGAAGGAAACCACACTCTCACG
CTGGCATTGGTTTGGCAGCTCATGAAAAGGTACACACTGAATATCCTGGAAGATATCAGAAGTGGACAGAAGGTCAATGA
TTACATTATTGTCAACTGGGTAAATACAACCTTGAAGGAGGCACAGAAAAGCTTGTCCATTGCTAGCTTCAAGGACCTAA
AGATCAGTACCAGCCTCCTGGTTCTGGATCCCATTGATGCCATTCAGCCGGGTTCCATAAACTATGGCCTTCTAAAGACA
GAAAACCTGGATGATGAAGAGAAACTCAACAATGCAAAGTATGCCATCTCTATGGCCAGAAAAATCAGAGCAAGGGTGTA
CGAGCTCCCATAAGACCTGGCTGAAGTAAACCCCAAAATGGTCATGACCGTGTTTGCCTGCCTCATGGGGATAGGGATGA
AGACGGTG
ORF - retro_mmus_3697 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.64 % |
Parental protein coverage: |
56.46 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | ANYHLENAGCTKITNFSTDIKDSKAYYHLLEQVAPKGDEEGIPAVVIDMSGLREKDDIQRAECMLQQAER |
| A.YHLEN.GCTKITNFSTDIK.S.AYYHLL.QV.PKGDEEGIP.VVID.SGLREKDDIQRAECMLQQAER |
Retrocopy | ADYHLENIGCTKITNFSTDIKNSEAYYHLLKQVVPKGDEEGIPDVVIDKSGLREKDDIQRAECMLQQAER |
|
Parental | LGCRQFVTATDVVR-GNP-KLNLAFIANLFNKYPALHKPENQDIDWGALEGETREERTFRNWMNSLGVNP |
| LGC.QFV......R.G.P.KLNLAFIANLFNKY.ALHKPENQDIDWGALEGE.REERT.RNWMNSLGVNP |
Retrocopy | LGCQQFVSYRRCLR<GIP<KLNLAFIANLFNKYLALHKPENQDIDWGALEGEMREERTYRNWMNSLGVNP |
|
Parental | RVNHLYSDLSDALVIFQLYEKIKVPVDWNRVNKPPYPKLGGNMKKLENCNYAVDLGKNQAKFSLVGIAGQ |
| .VNH.YSDLSDALVIFQLYEKIKVPVDWNRVNKPPYP....N.KKLENCNYAVDLGKNQAKFSLVGIAGQ |
Retrocopy | *VNHFYSDLSDALVIFQLYEKIKVPVDWNRVNKPPYP----NTKKLENCNYAVDLGKNQAKFSLVGIAGQ |
|
Parental | DLNEGNRTLTLALVWQLMRRYTLNILEDIGGGQKVNDDIIVNWVNTTLKEAQKSSSIASFKDPKISTSLP |
| DLNEGN.TLTLALVWQLM.RYTLNILEDI..GQKVND.IIVNWVNTTLKEAQKS.SIASFKD.KISTSL. |
Retrocopy | DLNEGNHTLTLALVWQLMKRYTLNILEDIRSGQKVNDYIIVNWVNTTLKEAQKSLSIASFKDLKISTSLL |
|
Parental | VLDLIDAIQPGSINYDLLKTENLDDEEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMG |
| VLD.IDAIQPGSINY.LLKTENLDDEEKLNNAKYAISMARKI.ARVY.LP.DL.EVNPKMVMTVFACLMG |
Retrocopy | VLDPIDAIQPGSINYGLLKTENLDDEEKLNNAKYAISMARKIRARVYELP*DLAEVNPKMVMTVFACLMG |
|
Parental | KGMKRV |
| .GMK.V |
Retrocopy | IGMKTV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
7 .85 RPM |
SRP007412_cerebellum |
0 .00 RPM |
10 .64 RPM |
SRP007412_heart |
0 .03 RPM |
26 .31 RPM |
SRP007412_kidney |
0 .04 RPM |
49 .03 RPM |
SRP007412_liver |
0 .00 RPM |
88 .45 RPM |
SRP007412_testis |
0 .00 RPM |
2 .65 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_3697 was not detected
No EST(s) were mapped for retro_mmus_3697 retrocopy.
No TSS is located nearby retro_mmus_3697 retrocopy 5' end.
retro_mmus_3697 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_3697 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.