RetrogeneDB ID: retro_mputfur_1037

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896999.1:83306..84187(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000005846
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SERPINB6
• Ensembl ID: ENSMPUG00000000448
• Aliases: None
• Description: serpin peptidase inhibitor, clade B (ovalbumin), member 6 [Source:HGNC Symbol;Acc:8950]

Sequence

>retro_mputfur_1037
AATGCACAGTACTTGTTTAGAACTGCCAACAGCCTCTTTGGAGACAAGTCTCATGAATTCCTCTCGTCTTTCAAAAACTC
CTGCCTCAAGTTCTACCAAGCTGAGATAGAAGAGCTCGACTTTCATACCGCTGCGGAAGAGACCAGGGCACACATCAACA
CCTGGGTGGCTGAAAAGACGGAAGGACAGATTACAGAGTTGCTGTCTCTGGGTTCAGTGGATTCAATGACTAATCTGATT
CTGGTGAATGCCATCTATTTCAAAAGATACTGGGATAATCAGTTTAACAAAACACAGACCATGGAAAGACCATTTAAAGT
CAGCAAGAATGAGGAGAAACCTGTGAAGATGATGTTTAAAAAATCTACCTTTCAAATGGCCTATATAGAGGAAATATTCA
CCAAAATTCTGGTGCTCTCCTTTGTGGGCAAAGAGCTGAACATGATCATCATGCTTCTAGATGAAAACCCGGATTTGAGG
ATGGTGGAGAAAGAACTCACTTATGAGAAATTTGCAGAGTGGATGAGGCCAGACATGCTGGACGAAGAAGAGGTGGAAGT
TTTCCTCCCTAGATTTAAATTGGAGGAGGATTACGACAAGAAGAATGTCCTTTGCTCTCTGGGCATGACCGATGCCTTTG
AGCAGGCCAAGGCAGACTTCTCTGGGATGTCGTCCAGGAAAGACCCGTATCTGTCCAGGGTGGTGCACAAGGCCTTAATG
GAGGTGAACAAGGAAGGCACAGAGGCTGCGGCGGCCACAGAGGCCATCACGATGTTGCGGTGTGCAAGAATCATGCCCCG
GTTCTGCGCCGACCACCCTTCCTCTTCTTTATCCAACACAGCAAGACCAACAGCATCCTGTTCTGTGGCCACTTCTCCTC
C

Alignment

ORF - retro_mputfur_1037 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.12 %
• Parental protein coverage: 77.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DTQYLLRTANRLFGNKSHEFLSSFKDSCLKFYQAEMEELDFHTAAEESRTHINTWVAEKTEGQIIELLSP
          ..QYL.RTAN.LFG.KSHEFLSSFK.SCLKFYQAE.EELDFHTAAEE.R.HINTWVAEKTEGQI.ELLS.
Retrocopy NAQYLFRTANSLFGDKSHEFLSSFKNSCLKFYQAEIEELDFHTAAEETRAHINTWVAEKTEGQITELLSL

Parental  GSVDPMTNLILVNAIYFKGNWDNQFNKTQTMERPFKVSKNEEKPVQMMFKKSTFQMTYIGEIFTKILVLP
          GSVD.MTNLILVNAIYFK..WDNQFNKTQTMERPFKVSKNEEKPV.MMFKKSTFQM.YI.EIFTKILVL.
Retrocopy GSVDSMTNLILVNAIYFKRYWDNQFNKTQTMERPFKVSKNEEKPVKMMFKKSTFQMAYIEEIFTKILVLS

Parental  YVGKELNMIIMLPDENMDLRTVEKELTYEKFAEWTRPDMLDEEEVEVFLPRFKLAEDYDMKNVLCSLGIT
          .VGKELNMIIML.DEN.DLR.VEKELTYEKFAEW.RPDMLDEEEVEVFLPRFKL.EDYD.KNVLCSLG.T
Retrocopy FVGKELNMIIMLLDENPDLRMVEKELTYEKFAEWMRPDMLDEEEVEVFLPRFKLEEDYDKKNVLCSLGMT

Parental  DAFEPAKADFSGMSSGKDLYLSRVVHKAFVEVNEEGTEAAAATAAIMLLRCARIVPRFCADH-PFLFFIQ
          DAFE.AKADFSGMSS.KD.YLSRVVHKA..EVN.EGTEAAAAT.AI..LRCARI.PRFCADH.PFLFFIQ
Retrocopy DAFEQAKADFSGMSSRKDPYLSRVVHKALMEVNKEGTEAAAATEAITMLRCARIMPRFCADH<PFLFFIQ

Parental  HSKTNSILFCGRFSS
          HSKTNSILFCG.FSS
Retrocopy HSKTNSILFCGHFSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1037 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1037 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017483	1 retrocopy	retro_btau_827,
Microcebus murinus	ENSMICG00000001981	1 retrocopy	retro_mmur_403,
Myotis lucifugus	ENSMLUG00000008803	1 retrocopy	retro_mluc_1610,
Monodelphis domestica	ENSMODG00000005468	2 retrocopies	retro_mdom_510, retro_mdom_602,
Mustela putorius furo	ENSMPUG00000000448	1 retrocopy	retro_mputfur_1037 ,
Mustela putorius furo	ENSMPUG00000016691	1 retrocopy	retro_mputfur_1510,
Mus musculus	ENSMUSG00000060147	2 retrocopies	retro_mmus_3191, retro_mmus_3192,
Pteropus vampyrus	ENSPVAG00000010001	1 retrocopy	retro_pvam_1243,
Tursiops truncatus	ENSTTRG00000003879	2 retrocopies	retro_ttru_1224, retro_ttru_1837,