>retro_mputfur_1510
GTTAAAAATGAAGCTGGTGATATGATGGCCAGTCTCCTTTCCCTAGACCATATCAATGATATGTTCATTGAACTGTGTGT
TGTTGATGAGATGTAATTTAAGGTTTAAGAAAATCAAGGTTTCAATCTGAGAATACAAAGAAAGTTCATTTTGGGGAAGT
GATGGGGAATCTTATCAGTGGCAGTAGTAGTCCAGCTCTCTCTGTTCTGCTGGGGATCAAAAGTACCCCAGTGATTTATG
GTACAACTTCATTGAACTACCATATCATGGGGAAAACATCAGTAGTCTGACCATTCTGCCAGTCAAGACCTCACCCTCAT
CCTCAGCCATTACTTCCACATCAGCACCAATACCATAGACAACTGATGTGAGCACCATGGCATCAAGAGTATGCAGCTAA
TTCTGCCCAAGTGCACAGCCATAGCATAAACTGATTTGAAGGAGCCACTGAAAGTTGTTGGTGTTGCCAAGATGCTTGAT
CCATCAAAAGCAAATTCTGCAAAAATAACAAGGTCAGAAAACCTACATGTTTCTTACATCTTGCAAAAAGCAAACCTTCA
AGTCAGCAAAGATGGAACCAAAGCTTCAGCAACAACAACTGGGAATCTAATCACAAGGTCATTACTTCCTTTGTTCATTG
TAGAC
ORF - retro_mputfur_1510 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.01 % |
Parental protein coverage: |
52.8 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | VKNETRGMIDSLLSPDLIDGALTRLVLVNAVYFK-GLWKSRFQPENTKK-RTFVAADGKSYQ-VPMLAQL |
| VKNE...M..SLLS.D.I......L..V....FK.GL.KSRFQ.ENTKK...F...DG.SYQ.V....QL |
Retrocopy | VKNEAGDMMASLLSLDHINDMFIELCVVDEM*FK<GLRKSRFQSENTKK<SSFWGSDGESYQ<VAVVVQL |
|
Parental | SVFRC-GSTSTPNDLWYNFIELPYHGESISMLIALPTESSTPLSAIIP-HISTKTIDSWMSTMVPKRVQV |
| S.F.C.G....P.DLWYNFIELPYHGE.IS.L..LP...S...SAI...HIST.TID........K..Q. |
Retrocopy | SLF-C>GDQKYPSDLWYNFIELPYHGENISSLTILPVKTSPSSSAITS<HISTNTIDN*CEHHGIKSMQL |
|
Parental | ILPKFTAVAQTDLKEPLKALGITEMFEPLKANFAKITRSENLHVSHILQKAKIEVSEDGTKASAATTAIL |
| ILPK.TA.A.TDLKEPLK..G...M..P.KAN.AKITRSENLHVS.ILQKA...VS.DGTKASA.TT..L |
Retrocopy | ILPKCTAIA*TDLKEPLKVVGVAKMLDPSKANSAKITRSENLHVSYILQKANLQVSKDGTKASATTTGNL |
|
Parental | IARSSPPWFIVD |
| I.RS..P.FIVD |
Retrocopy | ITRSLLPLFIVD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_1510 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_1510 was not experimentally validated.
Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.