RetrogeneDB ID:

retro_mputfur_1510

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL897190.1:1357691..1358336(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SERPINE2
Ensembl ID:ENSMPUG00000016691
Aliases:None
Description:serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 [Source:HGNC Symbol;Acc:8951]


Retrocopy-Parental alignment summary:






>retro_mputfur_1510
GTTAAAAATGAAGCTGGTGATATGATGGCCAGTCTCCTTTCCCTAGACCATATCAATGATATGTTCATTGAACTGTGTGT
TGTTGATGAGATGTAATTTAAGGTTTAAGAAAATCAAGGTTTCAATCTGAGAATACAAAGAAAGTTCATTTTGGGGAAGT
GATGGGGAATCTTATCAGTGGCAGTAGTAGTCCAGCTCTCTCTGTTCTGCTGGGGATCAAAAGTACCCCAGTGATTTATG
GTACAACTTCATTGAACTACCATATCATGGGGAAAACATCAGTAGTCTGACCATTCTGCCAGTCAAGACCTCACCCTCAT
CCTCAGCCATTACTTCCACATCAGCACCAATACCATAGACAACTGATGTGAGCACCATGGCATCAAGAGTATGCAGCTAA
TTCTGCCCAAGTGCACAGCCATAGCATAAACTGATTTGAAGGAGCCACTGAAAGTTGTTGGTGTTGCCAAGATGCTTGAT
CCATCAAAAGCAAATTCTGCAAAAATAACAAGGTCAGAAAACCTACATGTTTCTTACATCTTGCAAAAAGCAAACCTTCA
AGTCAGCAAAGATGGAACCAAAGCTTCAGCAACAACAACTGGGAATCTAATCACAAGGTCATTACTTCCTTTGTTCATTG
TAGAC

ORF - retro_mputfur_1510 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.01 %
Parental protein coverage: 52.8 %
Number of stop codons detected: 3
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalVKNETRGMIDSLLSPDLIDGALTRLVLVNAVYFK-GLWKSRFQPENTKK-RTFVAADGKSYQ-VPMLAQL
VKNE...M..SLLS.D.I......L..V....FK.GL.KSRFQ.ENTKK...F...DG.SYQ.V....QL
RetrocopyVKNEAGDMMASLLSLDHINDMFIELCVVDEM*FK<GLRKSRFQSENTKK<SSFWGSDGESYQ<VAVVVQL
ParentalSVFRC-GSTSTPNDLWYNFIELPYHGESISMLIALPTESSTPLSAIIP-HISTKTIDSWMSTMVPKRVQV
S.F.C.G....P.DLWYNFIELPYHGE.IS.L..LP...S...SAI...HIST.TID........K..Q.
RetrocopySLF-C>GDQKYPSDLWYNFIELPYHGENISSLTILPVKTSPSSSAITS<HISTNTIDN*CEHHGIKSMQL
ParentalILPKFTAVAQTDLKEPLKALGITEMFEPLKANFAKITRSENLHVSHILQKAKIEVSEDGTKASAATTAIL
ILPK.TA.A.TDLKEPLK..G...M..P.KAN.AKITRSENLHVS.ILQKA...VS.DGTKASA.TT..L
RetrocopyILPKCTAIA*TDLKEPLKVVGVAKMLDPSKANSAKITRSENLHVSYILQKANLQVSKDGTKASATTTGNL
ParentalIARSSPPWFIVD
I.RS..P.FIVD
RetrocopyITRSLLPLFIVD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_1510 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_1510 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG000000160751 retrocopy
Mustela putorius furoENSMPUG000000004481 retrocopy
Mustela putorius furoENSMPUG00000016691 1 retrocopy
retro_mputfur_1510 ,



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