RetrogeneDB ID: retro_mputfur_1079

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897010.1:8152..8994(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000009036
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NDFIP2
• Ensembl ID: ENSMPUG00000003366
• Aliases: None
• Description: Nedd4 family interacting protein 2 [Source:HGNC Symbol;Acc:18537]

Sequence

>retro_mputfur_1079
GTTCTGGGGCTCCACCTCGCGGCGGCGGACGCGGAGGCTTCCGCGGCTGCTGCGGGGGCGGCAGGAAGTGAAGCGGCCCG
GCCGGGCAACCGCGGCGGCAGAAACGGAGGCGGAAGGGGCGCTGCGGCCACGACGTCCGCGACGGGGCTGGGCGAGGGGG
GTCGAGCACCGAGAGGACTCGCCCGCTCGGAAGCCGGATCCCGAGCCGGGCGGGATTGGATCATCACCAGCCGGGAACTG
GCCGCTACCAGGTGCTTCACGATGAAGAGGATAATTCCGAGTCATCTGCGGCAGAGCAGCGATCAACGTCAAACGCAGCG
CCGCCGAGCGTTCAGACGGCTCCTTCAGCATCAGTCCTTGAAACGGACTCTTCTCCTCCACCTGACAGTACTATTACTGT
GGAAGTACCTACCACTTCAGATACAGAAGTTTACAGTGACTTTTATGCTGTGCCACCTCCCTGCAGTGTTGCTACCTCCT
TTCCTACAGACGATGAAGCTGAGAAGGCCAAAGCTGTTGCCGTGGCAACCGCAGCCGCAGAGACAGCCCAGAGAATTCAG
GAAGAAGAGTGCGGACCAAGAGATGACTTTAGTGATGCAGACCAGCTCAGAGTGGGTAATGATGCGATTTTCATGCTGGC
GTTTTTCATGGCATTTATTTTCAACTGGCTTGGATTTTGTTTATCCTTCTGTATCGCCAATACCATAGCTGGAAGTTATG
GTGTCATCTGTGGACTTGGACTTTCATTGATCAAATGGATTCTTATTGTTAGGTTTTCTGATTATTTTACTGGCTATTTC
AATGGACAGTATTGGCTTTGGTGGATATTTCTTGTACTTGGC

Alignment

ORF - retro_mputfur_1079 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.65 %
• Parental protein coverage: 94.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VLGLHLAVADAEVSAAAAGATGSEAARPGNRGGRNRGGRGAAATTSATGVDEG-VEHREDSPARKPDPEP
          VLGLHLA.ADAE.SAAAAGA.GSEAARPGNRGGRN.GGRGAAATTSATG..EG.VEHREDSPARKPDPEP
Retrocopy VLGLHLAAADAEASAAAAGAAGSEAARPGNRGGRNGGGRGAAATTSATGLGEG>VEHREDSPARKPDPEP

Parental  GR-MDHHQPGTGRYQVLHNEEDNSESSAVEQPSTSDAAPQSVQAAPSASVLETDSSPPPYSSITVEVPTT
          G...DHHQPGTGRYQVLH.EEDNSESSA.EQ.STS.AAP.SVQ.APSASVLETDSSPPP.S.ITVEVPTT
Retrocopy GG>LDHHQPGTGRYQVLHDEEDNSESSAAEQRSTSNAAPPSVQTAPSASVLETDSSPPPDSTITVEVPTT

Parental  SDTEVYSEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETAQRIQEEECQPRDDFSDADQLRVGNDG
          SDTEVYS.FY.VPPP.SVATS.PT.DEAEKAKA.A.A.AAAETAQRIQEEEC.PRDDFSDADQLRVGND.
Retrocopy SDTEVYSDFYAVPPPCSVATSFPTDDEAEKAKAVAVATAAAETAQRIQEEECGPRDDFSDADQLRVGNDA

Parental  IFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLV
          IFMLAFFMAFIFNWLGFCLSFCI.NTIAG.YG.ICG.GLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLV
Retrocopy IFMLAFFMAFIFNWLGFCLSFCIANTIAGSYGVICGLGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLV

Parental  LG
          LG
Retrocopy LG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1079 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1079 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000021282	2 retrocopies	retro_cjac_2643, retro_cjac_2644,
Cavia porcellus	ENSCPOG00000014687	1 retrocopy	retro_cpor_753,
Loxodonta africana	ENSLAFG00000000864	1 retrocopy	retro_lafr_841,
Monodelphis domestica	ENSMODG00000001586	2 retrocopies	retro_mdom_1600, retro_mdom_48,
Mustela putorius furo	ENSMPUG00000003366	1 retrocopy	retro_mputfur_1079 ,
Tupaia belangeri	ENSTBEG00000005780	1 retrocopy	retro_tbel_3231,