RetrogeneDB ID: retro_mputfur_1115

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897020.1:4503325..4503849(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SEC22A
• Ensembl ID: ENSMPUG00000004528
• Aliases: None
• Description: SEC22 vesicle trafficking protein homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:20260]

Sequence

>retro_mputfur_1115
CTGCAGGAGTGCAGAAAACATTTTAAAACACTTTCAAAGAAACTTGCTCAGCTTCCTAATGGATGTACCCTGAAAACTGG
ACATTATAATATTCATTTTATTAGCTCCCTGGGAATGAGTTACATGATGTTGTGCCCTGAAAATTACCCAAATGCTCTGG
TCTTCTCTATCCTGGATGAGCTTCAGAAGGAGTTCACTACTACTTATAACATGATGAAGACAAACCCTGCTGTCAGACCA
TACTGTTTCATTGAGCTTGATAACTTCATTCAGAGGACCAAGCAGCAATATAATCATCCTGGTTCTCTTTCAACAGAGAT
AAATCTATCAGACATGCAGATGGAAATCAAGCTGAGGCCCCCTTATCAAATTCTGTGTGTGAACTGGCGTTGGCCCATGG
AGTCACATCTGCATTTTCTTTTGACTCTAAAGGTGCTGGTAAGGTTTCTTCTGCTCACCTGTGACTGGAACCAGTGGCTC
TGTCAGAGACTGTGGCATTTATCCTCAGTCTTATATGCAGCTCT

Alignment

ORF - retro_mputfur_1115 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.98 %
• Parental protein coverage: 57. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VQECRKYFKMLSKKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYN
          .QECRK.FK.LSKKLAQLP..CTLKTGHYNI.FISSLG.SYMMLC.ENYPN.L.FS.LDELQKEF.TTYN
Retrocopy LQECRKHFKTLSKKLAQLPNGCTLKTGHYNIHFISSLGMSYMMLCPENYPNALVFSILDELQKEFTTTYN

Parental  MMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQMEIKLRPPYQI-SMCELGSANGVTSAF
          MMKTN.AVRPYCFIE.DNFIQRTKQ.YN.P.SLST.INLSDMQMEIKLRPPYQI.S.CEL..A.GVTSAF
Retrocopy MMKTNPAVRPYCFIELDNFIQRTKQQYNHPGSLSTEINLSDMQMEIKLRPPYQI<SVCELALAHGVTSAF

Parental  AIDYKGGGKISSAHQRLEPATLSGIVAFILSLLCGA
          ..D.KG.GK.SSAH..LEP..LS..VAFILSL.C..
Retrocopy SFDSKGAGKVSSAHL*LEPVALSETVAFILSLICSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1115 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1115 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000004528	1 retrocopy	retro_mputfur_1115 ,
Otolemur garnettii	ENSOGAG00000012485	1 retrocopy	retro_ogar_1949,