RetrogeneDB ID: retro_mputfur_1157

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897028.1:4963785..4964193(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GGCT
• Ensembl ID: ENSMPUG00000005083
• Aliases: None
• Description: gamma-glutamylcyclotransferase [Source:HGNC Symbol;Acc:21705]

Sequence

>retro_mputfur_1157
TTTGGCAATTCCTAAGGCAAAACAAGTGAAACTTGGCATGGAGGTACAGCCACCATTTTTCAAAGTCCTGGCAATGAAGT
ATGGGGAGTAGTACAGAAAATGAACAAAAGCAATTTGAGTTCTCTGGATAAGCAAGACGGGGTTAAAAGTGGAACATATG
TCCCAATAGAAGTTAATGTTTATACTCAAGAAGGAAAAGAAATAACCTGTCGAAGTTATCAGATGAAAAACTATGAGAGT
GCTCCCCCATTGCCCCAGTATAAAAAGGTCATTTGCCTGGGTGCAAAAGAAAATGGTTTGCCACTGGAGTATCAGAATAA
GTTAAATGCAATAGAACCAAATGACTACAAAGGAGAAGTCTCAGAAGATATTGAAAACATTATCAAAAAGGGAGAAACAA
AAGCTCAT

Alignment

ORF - retro_mputfur_1157 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.12 %
• Parental protein coverage: 72.34 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FGNSQGKTSETWHGGIATIFQSPGDEVWGVVWKMNKSNLSSLDKQEGVKSGTYVPIEVNVYTQEGKEITC
          FGNS.GKTSETWHGG.ATIFQSPG.EVWGVV.KMNKSNLSSLDKQ.GVKSGTYVPIEVNVYTQEGKEITC
Retrocopy FGNS*GKTSETWHGGTATIFQSPGNEVWGVVQKMNKSNLSSLDKQDGVKSGTYVPIEVNVYTQEGKEITC

Parental  RSYQMKNYESAPPSPQYKKVICLGAKENGLPLEYQKKLNAIEPNDYKGEVSEEIENIIKKGETKAH
          RSYQMKNYESAPP.PQYKKVICLGAKENGLPLEYQ.KLNAIEPNDYKGEVSE.IENIIKKGETKAH
Retrocopy RSYQMKNYESAPPLPQYKKVICLGAKENGLPLEYQNKLNAIEPNDYKGEVSEDIENIIKKGETKAH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1157 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1157 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000008757	1 retrocopy	retro_chof_467,
Callithrix jacchus	ENSCJAG00000008589	1 retrocopy	retro_cjac_1211,
Dasypus novemcinctus	ENSDNOG00000007242	1 retrocopy	retro_dnov_2324,
Mustela putorius furo	ENSMPUG00000005083	1 retrocopy	retro_mputfur_1157 ,
Otolemur garnettii	ENSOGAG00000013316	1 retrocopy	retro_ogar_2457,
Ochotona princeps	ENSOPRG00000005329	2 retrocopies	retro_opri_170, retro_opri_505,