RetrogeneDB ID: | retro_mputfur_1253 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897055.1:4296703..4297263(+) | ||
Located in intron of: | ENSMPUG00000001906 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMADHC | ||
Ensembl ID: | ENSMPUG00000000323 | ||
Aliases: | None | ||
Description: | methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:HGNC Symbol;Acc:25221] |
Percent Identity: | 84.66 % |
Parental protein coverage: | 63.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | RHEFVMAQYVNEFQGSNAPVEQEISSAETYFENAKVECAIQTCPELLRRDFESLFPEGATNKLMILTITQ |
RHEFVMAQYVNEF...NAP.EQEISSAETYFENAK.ECAIQTCPELL.RDFESLFPEGATNKLMILTITQ | |
Retrocopy | RHEFVMAQYVNEFHSNNAP-EQEISSAETYFENAKIECAIQTCPELLQRDFESLFPEGATNKLMILTITQ |
Parental | KTKNDMTVWSEEVENEREMLLEKFINGAKEICYALRAEGYWADFIDPSSG-LAFFGPYTNNTLFETDERY |
KTKND.T.WS.E.ENEREMLLEKFINGAK.ICYALRAE.Y..D..DPSSG.L..FG..TNN.LFETDE.Y | |
Retrocopy | KTKNDKTFWSKEAENEREMLLEKFINGAKKICYALRAERYCTDLTDPSSG<LVYFGTQTNNILFETDEHY |
Parental | RHLGFSVDDLGCCKVIRHRLWGTHVVVGSIFTNATPDSHIIKKLGGNYQ |
.HLGFSVDDLGCCKVI.HRLWGTHVVVGSIFTNAT.DSH..KKLGGN.Q | |
Retrocopy | *HLGFSVDDLGCCKVIHHRLWGTHVVVGSIFTNATLDSHFMKKLGGN*Q |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003086 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007690 | 1 retrocopy | |
Homo sapiens | ENSG00000168288 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000027348 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005633 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003566 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000000323 | 1 retrocopy |
retro_mputfur_1253 ,
|
Nomascus leucogenys | ENSNLEG00000010795 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000034385 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000012525 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021576 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009075 | 1 retrocopy |