RetrogeneDB ID: retro_mputfur_167

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896962.1:7476903..7477560(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019081
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000017487
• Aliases: None
• Description: THAP domain containing, apoptosis associated protein 2 [Source:UniProtKB/TrEMBL;Acc:G9KT67]

Sequence

>retro_mputfur_167
ATGCCGACCAATTGCGCCGCGGCGGGCTGTGCTACTACCTACAACAAGCACATTAACATCAGCTTCCACAGGTTTCCTTT
GGATCCTAAAAGAAGAAAAGAATGGATTCGCCTGCTTAGGCGCAAAAATTTTGTGCCAGGAAAACACACTTTTCTTTGTT
CAAAGCATTTTGAAGCCTCCTGTTTTGACTTAACAGGACAAACTCGACGACTTAAAATGGATGCTGTTCCAACCATTTTT
GATTTTTGTACCCATTTAAAGTCTATGAAACTCAAGTCAAGGAATCTTTTGAAGAAAAACAACAGTTGTACCCCAACAGG
AGCATCTAATTTAAAATCAAACATTAGTAGCCAGCAAGTACTACTTGAACACAGTTATGCTTTTAGGAATCCTATGGAGG
CAAAAAAGAGGATAATTAAACTGGAAAAAGAAATAGCAAGTTTAAGAAAGAAAATGAAAACTTGCTTACAAAAAGAACGC
AGAGCAACACGAAGATGGATCAAAGCCACATGCTTGGTGAAGAATCTGGAAGCAAATAACATATTACCTAAGGGCACATC
AGAACACATTTTACCAACTGCCTTAAGCAGTCTTCCTTTGGAAGATTTCAAGATTCTTGAACCTGATCAACAAGATAAAA
CATTACCAATTCTATAA

Alignment

ORF - retro_mputfur_167 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.54 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWIRLLRRKNFVPGKHTFLCSKHFEASCFDLTGQTRR
          MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWIRLLRRKNFVPGKHTFLCSKHFEASCFDLTGQTRR
Retrocopy MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWIRLLRRKNFVPGKHTFLCSKHFEASCFDLTGQTRR

Parental  LKMDAVPTIFDFCTHLKSMKLKSRNLLKKNNSCTPTGPSNLKSNISSQQVLLEHSYAFRNPMEAKKRIIK
          LKMDAVPTIFDFCTHLKSMKLKSRNLLKKNNSCTPTG.SNLKSNISSQQVLLEHSYAFRNPMEAKKRIIK
Retrocopy LKMDAVPTIFDFCTHLKSMKLKSRNLLKKNNSCTPTGASNLKSNISSQQVLLEHSYAFRNPMEAKKRIIK

Parental  LEKEIASLRKKMKTCLQKERRATRRWIKATCLVKNLEANNILPKGTSEHILPTALSSLPLEDFKILEPDQ
          LEKEIASLRKKMKTCLQKERRATRRWIKATCLVKNLEANNILPKGTSEHILPTALSSLPLEDFKILEPDQ
Retrocopy LEKEIASLRKKMKTCLQKERRATRRWIKATCLVKNLEANNILPKGTSEHILPTALSSLPLEDFKILEPDQ

Parental  QDKTLPIL
          QDKTLPIL
Retrocopy QDKTLPIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_167 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_167 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000456	1 retrocopy	retro_cfam_2005,
Mustela putorius furo	ENSMPUG00000017487	2 retrocopies	retro_mputfur_167 , retro_mputfur_509,