RetrogeneDB ID: retro_mputfur_509

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896917.1:7462938..7463276(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000017487
• Aliases: None
• Description: THAP domain containing, apoptosis associated protein 2 [Source:UniProtKB/TrEMBL;Acc:G9KT67]

Sequence

>retro_mputfur_509
ACCCACAACACACACGTGACCATCAGCCTCCACAGGCTCCCTCTGGATTCTAGAAGAAGAAAAGAATGGGCTCGCCCACT
TAGGTACAACAATTTTGTGCCAGGAAAACACTTTTCTTTGTTCAAAGCACTTTGAAGTCTCTTGTTCTGACTCAAAGGAC
AAGCTAGACGACTTACAATGGATGCAATTCCAACCAGTTTAGGTTTCTGTACCTATTGAAAGTCCATGAAACTCAAGTCA
AGGAATCTTTTGAAGGAAAACAACAGTTGTACTCCAACAGGACCATCTAGTTTAAGATCAAACGTTAGTAGTCAGCCAGA
ACTACATAACACAGTTAT

Alignment

ORF - retro_mputfur_509 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.35 %
• Parental protein coverage: 52.29 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TYNKHINISFHRFPLDPKRRKEWIRLLRRKNFVPGKHTFLCSKHFEASCFDLTGQTRRLKMDAVPTIFDF
          T.N.H..IS.HR.PLD..RRKEW.R.LR..NFVPGKH.F...K......F.L.GQ.RRL.MDA.PT...F
Retrocopy THNTHVTISLHRLPLDSRRRKEWARPLRYNNFVPGKH-FSLFKAL*SLLF*LKGQARRLTMDAIPTSLGF

Parental  CTHLKSMKLKSRNLLKKNNSCTPTGPSNLKSNISSQQVLLE-HSY
          CT..KSMKLKSRNLLK.NNSCTPTGPS.L.SN.SSQ..L...HSY
Retrocopy CTY*KSMKLKSRNLLKENNSCTPTGPSSLRSNVSSQPELHN<HSY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_509 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_509 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000456	1 retrocopy	retro_cfam_2005,
Mustela putorius furo	ENSMPUG00000017487	2 retrocopies	retro_mputfur_167, retro_mputfur_509 ,