RetrogeneDB ID: | retro_mputfur_225 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896898.1:49831179..49831745(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAR1A | ||
Ensembl ID: | ENSMPUG00000004338 | ||
Aliases: | None | ||
Description: | SAR1 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10534] |
Percent Identity: | 68.18 % |
Parental protein coverage: | 97.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE-ELTIAGM |
M.F.FEW......SVLQFLGLYKK.GKLVFLGLD...KTTLLHML..D.L.Q.V.TL.P.S....T.AG. | |
Retrocopy | MYFSFEWT----NSVLQFLGLYKKYGKLVFLGLDDVDKTTLLHMLNSD*LRQYVSTLDPISD<QVTVAGK |
Parental | TFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETI-SNVPILILGNKIDR |
TF.TFD.G.HEQA..VWKNYLPAI..IVF.VDC.DHP.LME...ELNALMT.ETI..NVPILIL.NK..R | |
Retrocopy | TFITFDVGSHEQASQVWKNYLPAISRIVFPVDCTDHPHLMETTLELNALMTNETI<TNVPILILDNKSNR |
Parental | TDAISEEKLREIFGLYGQTTG-KGNVTLKELNARPMEVFM-CSVLKRQGYGEGFRWLS |
T..ISEEKL.EIF.L.G.TTG.KG.VT.KEL...PMEV...C.VLKRQGYG.GF.WLS | |
Retrocopy | TGVISEEKLHEIFRLFG*TTG<KGIVTWKELTPCPMEVLL<CRVLKRQGYGKGFHWLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017868 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024879 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000004338 | 1 retrocopy |
retro_mputfur_225 ,
|
Oryctolagus cuniculus | ENSOCUG00000004547 | 1 retrocopy |