RetrogeneDB ID: | retro_ggor_2408 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:29977730..29978323(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAR1A | ||
Ensembl ID: | ENSGGOG00000024879 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT |
MSF.FEWIYNGFSSVLQFLGLYKK.GK.VFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE.L.IAGMT | |
Retrocopy | MSFLFEWIYNGFSSVLQFLGLYKKFGKPVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEKLIIAGMT |
Parental | FTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRT- |
FTT.DLGGH.QA..V.KNYLPAIN.IVFLVD.ADHS.L.ESKVELNALMTDE.ISNVPILILGNKIDRT. | |
Retrocopy | FTTLDLGGHKQACQV*KNYLPAINEIVFLVDSADHSGLMESKVELNALMTDEIISNVPILILGNKIDRT< |
Parental | DAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID |
.AISEEKL.EIFGL.GQTTGK.N..L.ELNA.P.EVFMCSVLKRQG.GEGF.WLSQ.ID | |
Retrocopy | NAISEEKLFEIFGLSGQTTGKRNMAL*ELNAHPSEVFMCSVLKRQG*GEGFCWLSQCID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 54 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 52 .24 RPM |
SRP007412_heart | 0 .00 RPM | 18 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .07 RPM |
SRP007412_liver | 0 .00 RPM | 58 .37 RPM |
SRP007412_testis | 3 .11 RPM | 63 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017868 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016353 | 5 retrocopies | |
Homo sapiens | ENSG00000079332 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000024879 | 3 retrocopies |
retro_ggor_144, retro_ggor_2408 , retro_ggor_2929,
|
Microcebus murinus | ENSMICG00000001638 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000006626 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004338 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011243 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004547 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005040 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000002374 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000002584 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012780 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008657 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000005955 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002631 | 2 retrocopies |