RetrogeneDB ID: retro_mputfur_568

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896921.1:7407911..7408424(+)
• Located in intron of: ENSMPUG00000007433

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C1orf194
• Ensembl ID: ENSMPUG00000002787
• Aliases: None
• Description: chromosome 1 open reading frame 194 [Source:HGNC Symbol;Acc:32331]

Sequence

>retro_mputfur_568
ATGCCTTTCACCCGAGACCCTTTCCAGCACCCTACGTTGGATAACGATGAGACCTACCTGGGAAAACTCCAGGCTTCCAA
GAAACTGCCATATAAGAACCCAGCTCACCTTGCTCAGCAACAGGAACCCTGGAGTCGGCTCAGCTCAACTCCCACAATCA
CCTCCATGAGGTGGGATGTTTATTTTTTTGATCCTGAGATACCAAAGGATGACCTGGATTTTCGCTTAGCAGCCTTGTAC
AACCACCACACAGGGACATTCAAGAACAAAAGTGAGATACTCTTACACCAGGAGACTACCCAGGATACCCATGAAATCAT
CAAGACCCAATTCCCTGGAGAACTTTTACCCCCTCCTCCACGACCTTCCATCACTTCCCGGTCTAACATCAGATACTGAA
TCAACCCTAAGAAGGAGTCTATCCACAGCATCCAGGGATCCATAGTGTCCCCTCACACTGCAGCCACCAATGGAGGCTAC
TCCCAAAAGACTGATGGTGGCTTCTTCTCTACC

Alignment

ORF - retro_mputfur_568 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.49 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPFTRDPFQHPTLDNDETYLGKLRASKKLPYKNPAHLAQQQEPWSRLSSTPTITSMRRDVYFFDPEIPKD
          MPFTRDPFQHPTLDNDETYLGKL.ASKKLPYKNPAHLAQQQEPWSRLSSTPTITSMR.DVYFFDPEIPKD
Retrocopy MPFTRDPFQHPTLDNDETYLGKLQASKKLPYKNPAHLAQQQEPWSRLSSTPTITSMRWDVYFFDPEIPKD

Parental  DLDFRLAALYNHHTGTFKNKSEILLHQETTQDTHGIIKTQFPGELLPPPPPPSITSRSNIRYWINPKKES
          DLDFRLAALYNHHTGTFKNKSEILLHQETTQDTH.IIKTQFPGELLPPPP.PSITSRSNIRY.INPKKES
Retrocopy DLDFRLAALYNHHTGTFKNKSEILLHQETTQDTHEIIKTQFPGELLPPPPRPSITSRSNIRY*INPKKES

Parental  IHSIQGSIVSPHTAATNGGYSRKTDGGFFST
          IHSIQGSIVSPHTAATNGGYS.KTDGGFFST
Retrocopy IHSIQGSIVSPHTAATNGGYSQKTDGGFFST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_568 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_568 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019853	3 retrocopies	retro_cfam_1217, retro_cfam_1651, retro_cfam_1827,
Monodelphis domestica	ENSMODG00000002197	1 retrocopy	retro_mdom_1332,
Mustela putorius furo	ENSMPUG00000002787	3 retrocopies	retro_mputfur_561, retro_mputfur_568 , retro_mputfur_672,