RetrogeneDB ID: retro_mputfur_588

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896923.1:5386190..5386650(-)
• Located in intron of: ENSMPUG00000016985

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM147
• Ensembl ID: ENSMPUG00000006709
• Aliases: None
• Description: transmembrane protein 147 [Source:HGNC Symbol;Acc:30414]

Sequence

>retro_mputfur_588
CTCTTCCTGGCCATGTTTTTTTTCCTTCTAAGGCCATGTTTTTTTCCCACCTGGGAAGGCAGCATCTGTGACTTCATTAG
GATGTCATGAAGGTCATCGTGAATGTGGCAGACCAGATACATCTAAACTTTGTCATGTCCTGGAATGTATGCAAAGGGGA
GTACAGGATCATGGTTGCTGTCTTGGGCTGGGCTATGGCCATGCTCATTATGTCCCGCTCCTTCTCATCTGAGTTGGAGC
CCAGAGCATTGAGTTTGACTGGAAGTACATCCAGAAGAGCATGGACTCCAATATCAGGCTGGTCCATTACATCATCTCAT
TTGCCCAGGTCTAGATGATAACACACTACAACCCATACCACACTTTTCAGCCAGCAGTGCTCCTACTGTCCTTAGTCTAT
GAGGCCTTTGTCATGGAGACCTTCATCCACCTCTGTTCCCTGGGCAGCTGGACAGCACTC

Alignment

ORF - retro_mputfur_588 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.82 %
• Parental protein coverage: 83.42 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LFVQLCKMLFLATFFPTWEGGIYDFIG-EFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGWATAEL
          LF......L....FFPTWEG.I.DFI....MK..V.VAD.I.LN.VMS.N..KGEY.IMVA.LGWA.A.L
Retrocopy LFLAMXXXLLRPCFFPTWEGSICDFIR<DVMKVIVNVADQIHLNFVMSWNVCKGEYRIMVAVLGWAMAML

Parental  IMSRCIP-LWVGARGIEFDWKYIQMSIDSNISLVHYIVASAQVWMITRYDLYHTFRPAVLLLMFLSVYKA
          IMSR......VGA..IEFDWKYIQ.S.DSNI.LVHYI...AQV.MIT.Y..YHTF.PAVLLL....VY.A
Retrocopy IMSRSFS<I*VGAQSIEFDWKYIQKSMDSNIRLVHYIISFAQV*MITHYNPYHTFQPAVLLLSL--VYEA

Parental  FVMETFVHLCSLGSWTAL
          FVMETF.HLCSLGSWTAL
Retrocopy FVMETFIHLCSLGSWTAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_588 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_588 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000010132	1 retrocopy	retro_acar_105,
Ailuropoda melanoleuca	ENSAMEG00000000375	1 retrocopy	retro_amel_1193,
Bos taurus	ENSBTAG00000015920	1 retrocopy	retro_btau_1546,
Canis familiaris	ENSCAFG00000006960	2 retrocopies	retro_cfam_1070, retro_cfam_1265,
Dasypus novemcinctus	ENSDNOG00000004059	1 retrocopy	retro_dnov_1123,
Felis catus	ENSFCAG00000006373	2 retrocopies	retro_fcat_1489, retro_fcat_224,
Myotis lucifugus	ENSMLUG00000016383	1 retrocopy	retro_mluc_1889,
Mustela putorius furo	ENSMPUG00000006709	1 retrocopy	retro_mputfur_588 ,
Tarsius syrichta	ENSTSYG00000008207	1 retrocopy	retro_tsyr_56,
Tursiops truncatus	ENSTTRG00000015114	2 retrocopies	retro_ttru_1406, retro_ttru_219,