RetrogeneDB ID: retro_mputfur_732

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896942.1:6346990..6347568(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000003388
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: IL18
• Ensembl ID: ENSMPUG00000003678
• Aliases: None
• Description: interleukin 18 (interferon-gamma-inducing factor) [Source:HGNC Symbol;Acc:5986]

Sequence

>retro_mputfur_732
ATGGCTACTAACCCAGTAGAAGACAACTGCATCAACTTTGTGGGAATGAAATTTATTGACAATATACTTTACTTTGTAGC
TGAAAATGATGACAACCTGGAATCAGATTACTTTGGCAGCTTGAACCTAGACTCTCTATCATACGAAATTTGAACGACCA
AGTTCTCTTCATTAATGAGGGCAATCAACCAGTGTTTGAAGATATGCCTGATTCTGACTGTACAGAAAGCGCATCCCATA
CCATATTTATCATAAATACGTATAAAGATAGCCTCACCAGAGGTCTGGCGGTAACCATCTCTGTGATGTGTAATAGAATG
TCTACTCTGTCCTGTAAGAACAAAACTATTTCCTTTAAGGAAATGAGACCCCCAGACAGTATCAGCGACGAAGGGAATGA
CATCATATTCTTTCAAAGAAGTGTTCCAGGACATGACGATAAGATACAATTTGAGTCTTCATTGTACCAAGGACACTTTC
CAGCTTGTAAAAGAGAGAAAGAGCTTTTCAAACTCATTTTGAAAGAAAAGGATGGAAGTGGGGACAAATCCGTTATGTTC
ACTGTTCAAAACCCCAAG

Alignment

ORF - retro_mputfur_732 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.88 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MATNPVEDNCINFVGMKFIDNTLYFVAENDDNLESDYFG-KLEPRLSIIRNLNDQVLFVNEGNQPVFEDM
          MATNPVEDNCINFVGMKFIDN.LYFVAENDDNLESDYFG..LEPRLSIIRNLNDQVLF.NEGNQPVFEDM
Retrocopy MATNPVEDNCINFVGMKFIDNILYFVAENDDNLESDYFG<QLEPRLSIIRNLNDQVLFINEGNQPVFEDM

Parental  PDSDCTENASHTVFIINMYKDSLTRGLAVTISVMCNRMSTLSCKNKTISFKEMRPPDSISDEGNDIIFFQ
          PDSDCTE.ASHT.FIIN.YKDSLTRGLAVTISVMCNRMSTLSCKNKTISFKEMRPPDSISDEGNDIIFFQ
Retrocopy PDSDCTESASHTIFIINTYKDSLTRGLAVTISVMCNRMSTLSCKNKTISFKEMRPPDSISDEGNDIIFFQ

Parental  RSVPGHDDKIQFESSLYQGHFLACKREKELFKLILKEKDGSGDKSVMFTVQNPK
          RSVPGHDDKIQFESSLYQGHF.ACKREKELFKLILKEKDGSGDKSVMFTVQNPK
Retrocopy RSVPGHDDKIQFESSLYQGHFPACKREKELFKLILKEKDGSGDKSVMFTVQNPK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_732 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_732 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000028093	1 retrocopy	retro_lafr_425,
Mustela putorius furo	ENSMPUG00000003678	1 retrocopy	retro_mputfur_732 ,
Pteropus vampyrus	ENSPVAG00000014063	1 retrocopy	retro_pvam_854,