RetrogeneDB ID:

retro_pvam_854

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_1365:160340..160768(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:IL18
Ensembl ID:ENSPVAG00000014063
Aliases:None
Description:interleukin 18 (interferon-gamma-inducing factor) [Source:HGNC Symbol;Acc:5986]


Retrocopy-Parental alignment summary:






>retro_pvam_854
ATGGCTGCTGCATTATTAGAAGACAATTGCATCGGTTTTGTGGGAATAAACTTTATTGACAATACACTTTACTTTGTAAT
TGAAAGTGATGAAAACCTGGGAACAGATTACTTTGGCAAGCTTGAACCTCGGTTCTCAATCATATGAAATCTGAACAACC
AATTTCTCTTCATTTACGAGGAAAACCAAGCTGTGTTTAAAGATATGGCTGATTCTGACTGTATAGATAATGCATCCCAG
ACCAAATTTATATGTATGTATAAAGATAGCCTCACTAGAGGTCTGGCAGTAGCCATTTGTATGAAGTATAATAAAATTTT
TACTCTCTCGTAAGAACAAAATTATTCCTTTAAGGAAATTAATCCTCTTAATAATATCAATGATGAAGGAAATTACATCA
TATTTTTAAAAGAAGTGTTCTAGAACAT

ORF - retro_pvam_854 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.23 %
Parental protein coverage: 77.84 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAAEPVEDDCISFVEMKFIDNTLYFVVKK-KNLESDYFGKLEPRFSIIRNLNNQVLFIYEGNTAVFEDMP
MAA...ED.CI.FV...FIDNTLYFV.....NL..DYFGKLEPRFSII.NLNNQ.LFIYE.N.AVF.DM.
RetrocopyMAAALLEDNCIGFVGINFIDNTLYFVIESDENLGTDYFGKLEPRFSII*NLNNQFLFIYEENQAVFKDMA
ParentalDSDCTDNAPQTEFIIYMYKDSLTRGLAVAICVKCNKISTLSCDNKIISFKEMNPPDNINDDGNDIIF-FK
DSDC.DNA.QT.FI..MYKDSLTRGLAVAIC.K.NKI.TLS......SFKE.NP..NIND.GN.IIF.FK
RetrocopyDSDCIDNASQTKFIC-MYKDSLTRGLAVAICMKYNKIFTLS*EQN-YSFKEINPLNNINDEGNYIIF<FK
ParentalRSVPEH
RSV.EH
RetrocopyRSVLEH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_854 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Loxodonta africana ENSLAFG000000280931 retrocopy
Mustela putorius furoENSMPUG000000036781 retrocopy
Pteropus vampyrus ENSPVAG00000014063 1 retrocopy
retro_pvam_854 ,



Copyright © RetrogeneDB 2014-2017