RetrogeneDB ID: | retro_pvam_854 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_1365:160340..160768(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IL18 | ||
Ensembl ID: | ENSPVAG00000014063 | ||
Aliases: | None | ||
Description: | interleukin 18 (interferon-gamma-inducing factor) [Source:HGNC Symbol;Acc:5986] |
Percent Identity: | 71.23 % |
Parental protein coverage: | 77.84 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAAEPVEDDCISFVEMKFIDNTLYFVVKK-KNLESDYFGKLEPRFSIIRNLNNQVLFIYEGNTAVFEDMP |
MAA...ED.CI.FV...FIDNTLYFV.....NL..DYFGKLEPRFSII.NLNNQ.LFIYE.N.AVF.DM. | |
Retrocopy | MAAALLEDNCIGFVGINFIDNTLYFVIESDENLGTDYFGKLEPRFSII*NLNNQFLFIYEENQAVFKDMA |
Parental | DSDCTDNAPQTEFIIYMYKDSLTRGLAVAICVKCNKISTLSCDNKIISFKEMNPPDNINDDGNDIIF-FK |
DSDC.DNA.QT.FI..MYKDSLTRGLAVAIC.K.NKI.TLS......SFKE.NP..NIND.GN.IIF.FK | |
Retrocopy | DSDCIDNASQTKFIC-MYKDSLTRGLAVAICMKYNKIFTLS*EQN-YSFKEINPLNNINDEGNYIIF<FK |
Parental | RSVPEH |
RSV.EH | |
Retrocopy | RSVLEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Loxodonta africana | ENSLAFG00000028093 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003678 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014063 | 1 retrocopy |
retro_pvam_854 ,
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